Os03g0186600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Transcription factor, MADS-box domain containing protein.
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Os03g0186600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Transcription factor, MADS-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 155.51 | 0.586 | 10 | -5.27 | 0.412 | -2.5 | 0.595 | -8.88 | 0.635 | 5.71 | 1.06 | 4307 | -- | -- |
| 193.21 | 0.647 | 9.82 | -3.83 | 0.274 | -1.63 | -0.622 | -- | 0.86 | 5.48 | 3.586 | 14256 | -- | -- |
| 155.91 | 0.582 | 10 | -5.25 | 0.42 | -2.57 | -- | -9.07 | 0.635 | 4.99 | 1.059 | 4289 | -- | -- |
| 172.19 | 0.611 | 9.72 | -3.77 | 0.292 | -2.01 | -- | -- | 1.38 | 6.42 | 22.15 | 18861 | -- | -- |
| 164.96 | 0.598 | 10 | -5.24 | -- | -2.5 | -- | -8.89 | 0.632 | -- | 1.05 | 4294 | -- | -- |
| 319.08 | 0.837 | 9.9 | -3.69 | 0.351 | -- | 0.594 | -- | 0.619 | 7.06 | -- | -- | -- | -- |
| 319.99 | 0.838 | 9.9 | -3.68 | 0.354 | -- | -- | -- | 0.617 | 6.86 | -- | -- | -- | -- |
| 168.52 | 0.605 | 9.72 | -3.36 | -- | -2.11 | -- | -- | 1.39 | -- | 20 | 18074 | -- | -- |
| 473.51 | 1.01 | 9.75 | -- | 0.283 | -2.21 | -- | -- | 1.79 | 6.19 | 20.01 | 18460 | -- | -- |
| 326.54 | 0.844 | 9.9 | -3.67 | -- | -- | -- | -- | 0.624 | -- | -- | -- | -- | -- |
| 677.34 | 1.22 | 9.81 | -- | 0.316 | -- | -- | -- | 1.03 | 7.58 | -- | -- | -- | -- |
| 180.09 | 0.625 | 9.51 | -- | -- | -3.67 | -- | -- | 2.36 | -- | 1.215 | 47520 | -- | -- |
| 682.71 | 1.22 | 9.81 | -- | -- | -- | -- | -- | 1.03 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 111.68 | temperature | 25 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 2 | 112.38 | temperature | 25 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 8 | 113.78 | temperature | 25 | 43200 | > th | dose independent | rect. | 6 | 17 |
| 15 | 113.88 | temperature | 25 | 43200 | < th | dose independent | rect. | 6 | 17 |
| 17 | 113.93 | temperature | 25 | 43200 | > th | dose independent | rect. | 6 | 5 |
| 18 | 113.93 | temperature | 25 | 43200 | < th | dose independent | rect. | 6 | 5 |
| 45 | 114.13 | temperature | 25 | 43200 | > th | dose independent | rect. | 10 | 13 |
| 47 | 114.13 | temperature | 25 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 67 | 114.26 | temperature | 25 | 43200 | < th | dose independent | rect. | 10 | 13 |
| 86 | 114.37 | temperature | 25 | 43200 | > th | dose independent | rect. | 17 | 20 |
| 162 | 114.61 | temperature | 30 | 43200 | > th | dose dependent | rect. | 15 | 4 |
| 176 | 114.62 | temperature | 25 | 43200 | > th | dose independent | sin | 20 | NA |
| 184 | 114.63 | temperature | 25 | 43200 | < th | dose independent | rect. | 17 | 21 |
| 214 | 114.69 | temperature | 30 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 217 | 114.70 | temperature | 25 | 43200 | > th | dose independent | rect. | 10 | 22 |
| 246 | 114.75 | temperature | 25 | 43200 | > th | dose independent | sin | 2 | NA |
| 247 | 114.75 | temperature | 25 | 43200 | > th | dose independent | no | NA | NA |
| 251 | 114.76 | temperature | 25 | 43200 | < th | dose independent | sin | 20 | NA |
| 255 | 114.76 | temperature | 20 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 332 | 114.91 | temperature | 25 | 43200 | < th | dose independent | rect. | 9 | 23 |
| 335 | 114.92 | temperature | 25 | 43200 | < th | dose independent | sin | 2 | NA |
| 362 | 114.96 | temperature | 25 | 43200 | < th | dose independent | no | NA | NA |
| 369 | 114.96 | temperature | 30 | 43200 | > th | dose dependent | sin | 13 | NA |
| 526 | 115.24 | temperature | 25 | 43200 | > th | dose independent | rect. | 18 | 2 |
| 531 | 115.24 | temperature | 20 | 43200 | > th | dose dependent | rect. | 8 | 13 |
| 543 | 115.27 | temperature | 25 | 43200 | > th | dose independent | rect. | 17 | 5 |
| 585 | 115.34 | temperature | 30 | 43200 | > th | dose independent | sin | 12 | NA |
| 586 | 115.34 | temperature | 25 | 43200 | < th | dose independent | rect. | 17 | 5 |
| 654 | 115.45 | temperature | 30 | 43200 | < th | dose independent | sin | 12 | NA |
| 679 | 115.51 | temperature | 25 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 734 | 115.56 | temperature | 20 | 43200 | > th | dose dependent | sin | 20 | NA |
| 742 | 115.57 | temperature | 30 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 751 | 115.58 | temperature | 30 | 43200 | < th | dose dependent | rect. | 8 | 14 |
| 795 | 115.65 | temperature | 30 | 43200 | < th | dose independent | rect. | 16 | 10 |
| 797 | 115.65 | temperature | 30 | 43200 | < th | dose independent | rect. | 16 | 12 |