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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0580700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : MADS box transcription factor MADS17.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.12 (0.036) R2 : 0.00536
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.119 (0.0758) R2dN8 : 0.00692 R2N8 : 0.00536
σ : 0.678
deviance : 211.11
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
206.2 0.675 3.12 0.125 0.607 -0.519 0.956 -0.62 -0.131 0.713 0.7711 76 -- --
206.43 0.669 3.11 0.112 0.678 -0.569 0.315 -- -0.124 0.418 0.4815 67 -- --
206.26 0.669 3.13 0.0404 0.606 -0.52 -- 0.144 -0.148 0.342 0.48 67 -- --
206.37 0.669 3.13 0.0714 0.614 -0.527 -- -- -0.137 0.296 0.48 64 -- --
209.81 0.675 3.11 0.105 -- -0.0873 -- 0.163 -0.109 -- 0.3892 58 -- --
210.1 0.68 3.11 0.115 0.00364 -- 0.502 -- -0.104 4.54 -- -- -- --
210.77 0.68 3.11 0.112 0.0104 -- -- -- -0.107 7.52 -- -- -- --
209.97 0.675 3.11 0.11 -- -0.0875 -- -- -0.108 -- 0.5042 54 -- --
206.51 0.669 3.13 -- 0.614 -0.527 -- -- -0.139 0.312 0.48 64 -- --
210.78 0.678 3.11 0.112 -- -- -- -- -0.106 -- -- -- -- --
211.1 0.68 3.12 -- 0.0116 -- -- -- -0.119 6.86 -- -- -- --
210.28 0.675 3.12 -- -- -0.0885 -- -- -0.12 -- 0.4884 54 -- --
211.11 0.678 3.12 -- -- -- -- -- -0.119 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 199.96 wind 1.0 30 < th dose dependent rect. 4 8
5 200.65 wind 1.0 30 < th dose independent rect. 4 8
7 200.90 wind 1.0 30 < th dose dependent rect. 4 4
8 200.91 wind 1.0 30 < th dose dependent rect. 4 2
17 201.49 wind 1.0 30 < th dose independent rect. 4 3
25 201.90 radiation 40.0 10 > th dose dependent rect. 13 1
52 202.05 wind 1.0 30 < th dose dependent rect. 5 13
59 202.08 wind 7.0 90 > th dose independent rect. 8 1
60 202.09 wind 7.0 90 > th dose dependent rect. 8 1
61 202.12 wind 1.0 30 < th dose independent rect. 5 17
62 202.14 wind 7.0 90 > th dose independent rect. 4 5
63 202.14 wind 1.0 30 < th dose independent rect. 5 19
64 202.16 wind 7.0 90 > th dose dependent rect. 2 7
65 202.17 wind 1.0 30 < th dose independent rect. 5 13
76 202.22 wind 7.0 90 > th dose independent rect. 1 8
119 202.47 radiation 40.0 10 > th dose dependent sin 13 NA
122 202.63 radiation 40.0 30 > th dose independent rect. 12 3
142 202.67 temperature 25.0 90 > th dose dependent rect. 17 1
165 202.99 temperature 25.0 10 > th dose dependent rect. 23 1
167 203.06 atmosphere 1000.0 10 < th dose dependent rect. 13 1
174 203.09 wind 1.0 10 < th dose independent rect. 13 1
176 203.09 wind 1.0 10 < th dose dependent rect. 13 1
180 203.11 atmosphere 1000.0 90 < th dose independent rect. 13 1
206 203.22 radiation 40.0 30 > th dose independent sin 13 NA
298 203.43 radiation 40.0 30 < th dose independent sin 13 NA
342 204.07 humidity 70.0 90 < th dose independent rect. 12 1
343 204.08 humidity 80.0 90 < th dose independent rect. 1 2
346 204.09 humidity 80.0 90 < th dose dependent rect. 1 2
348 204.09 humidity 80.0 90 < th dose dependent rect. 24 4
357 204.15 precipitation 0.1 720 < th dose independent rect. 2 16
358 204.15 precipitation 0.1 720 < th dose dependent rect. 2 16
383 204.23 humidity 60.0 30 < th dose dependent rect. 18 1
404 204.29 temperature 25.0 10 < th dose dependent rect. 9 1
406 204.30 humidity 90.0 10 < th dose dependent rect. 2 2
407 204.31 humidity 60.0 30 < th dose independent rect. 18 1
472 204.48 temperature 25.0 90 > th dose independent rect. 17 1
493 204.58 atmosphere 1005.0 30 < th dose independent rect. 18 1
494 204.58 wind 5.0 720 < th dose independent rect. 24 9
507 204.70 humidity 80.0 90 < th dose independent rect. 17 1
560 204.82 humidity 90.0 90 < th dose dependent rect. 17 1
562 204.83 temperature 10.0 30 > th dose dependent rect. 12 13
596 204.93 wind 5.0 90 < th dose independent rect. 1 11
628 204.99 wind 9.0 90 < th dose dependent rect. 18 18
635 205.03 temperature 25.0 30 > th dose dependent rect. 17 15
660 205.11 radiation 1.0 30 < th dose dependent rect. 4 23
667 205.16 temperature 25.0 30 > th dose dependent rect. 22 6
673 205.18 wind 5.0 90 < th dose independent rect. 18 18
678 205.19 wind 5.0 720 < th dose independent rect. 23 13
714 205.20 temperature 25.0 10 < th dose dependent rect. 9 8
719 205.22 radiation 10.0 10 < th dose dependent rect. 6 3
722 205.23 wind 5.0 720 < th dose independent rect. 24 11
745 205.26 humidity 90.0 10 < th dose independent rect. 12 7
775 205.34 temperature 25.0 10 > th dose independent rect. 23 1
780 205.35 temperature 25.0 30 > th dose dependent rect. 22 9
792 205.40 wind 3.0 720 > th dose independent rect. 2 1
798 205.43 wind 5.0 720 < th dose independent rect. 23 7
799 205.43 atmosphere 1005.0 30 < th dose independent rect. 17 15
800 205.43 radiation 1.0 90 < th dose dependent rect. 16 20
826 205.50 atmosphere 1005.0 270 < th dose independent rect. 3 1
832 205.53 wind 9.0 720 < th dose dependent rect. 24 11
833 205.54 radiation 1.0 90 < th dose dependent rect. 16 16
859 205.63 atmosphere 1005.0 90 < th dose independent rect. 2 6
860 205.63 atmosphere 1005.0 90 < th dose independent rect. 12 20
864 205.63 wind 9.0 720 < th dose dependent rect. 23 13
865 205.64 atmosphere 1005.0 30 > th dose dependent rect. 15 1
871 205.64 wind 9.0 30 < th dose dependent rect. 14 22
876 205.66 wind 3.0 90 > th dose independent rect. 6 1
912 205.68 wind 3.0 720 > th dose independent rect. 23 15
932 205.71 wind 9.0 30 > th dose independent rect. 17 3
944 205.73 radiation 10.0 10 < th dose independent rect. 6 3
948 205.73 wind 3.0 720 > th dose dependent sin 7 NA
956 205.74 humidity 90.0 10 < th dose dependent rect. 12 7
959 205.75 wind 9.0 720 < th dose dependent rect. 4 8
960 205.75 temperature 20.0 30 > th dose dependent rect. 17 8
963 205.76 radiation 10.0 10 < th dose independent rect. 7 1
965 205.76 temperature 20.0 30 > th dose independent rect. 12 13
976 205.77 wind 1.0 720 < th dose dependent rect. 3 1
985 205.78 wind 5.0 720 < th dose independent rect. 21 15
990 205.79 temperature 25.0 10 < th dose dependent rect. 16 1
997 205.81 atmosphere 1005.0 30 > th dose independent rect. 16 17