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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0579600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Transcription factor MADS27.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.77 (0.0271) R2 : 0.645
β1 : -1.64 (0.102) R2dD : 0.228 R2D : 0.319
β2 : 1.05 (0.07) R2dC : 0.174 R2C : 0.159
β3 : -0.907 (0.0743) R2dE : 0.125 R2E : 0.192
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.272 (0.0577) R2dN8 : 0.0238 R2N8 : 0.0494
σ : 0.505
deviance : 117.79
__
_____
C
peak time of C : 7.07
E
wheather : temperature
threshold : 27.14
memory length : 1352
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
112.5 0.498 4.84 -2.13 1.05 -0.598 -1.46 -2.22 0.131 7.1 28.81 1411 -- --
112.29 0.494 4.77 -1.67 1.04 -0.913 -1.45 -- 0.272 6.96 26.96 1293 -- --
117.64 0.505 4.82 -2.1 1.04 -0.685 -- -1.73 0.192 7.23 27.26 1409 -- --
117.79 0.505 4.77 -1.64 1.05 -0.907 -- -- 0.272 7.07 27.14 1352 -- --
143.25 0.557 4.77 -1.42 -- -1.7 -- 1.78 0.46 -- 24.72 690 -- --
149.61 0.573 4.76 -1.92 1.03 -- -1.45 -- 0.281 7.36 -- -- -- --
155.16 0.583 4.76 -1.95 1.02 -- -- -- 0.285 7.56 -- -- -- --
145.66 0.562 4.76 -1.61 -- -1.52 -- -- 0.426 -- 24.67 718 -- --
185.5 0.634 4.73 -- 0.988 -1.06 -- -- 0.539 7.32 25.71 1434 -- --
211.31 0.679 4.79 -1.94 -- -- -- -- 0.3 -- -- -- -- --
255.47 0.748 4.71 -- 1.01 -- -- -- 0.502 7.69 -- -- -- --
210.27 0.675 4.7 -- -- -1.83 -- -- 0.681 -- 23.9 738 -- --
310.19 0.822 4.74 -- -- -- -- -- 0.515 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 105.09 humidity 70.0 14400 > th dose independent rect. 19 1
2 105.17 humidity 70.0 14400 > th dose independent rect. 19 12
3 105.17 humidity 90.0 43200 > th dose dependent rect. 9 4
4 105.31 humidity 70.0 14400 > th dose independent rect. 19 6
7 105.38 humidity 70.0 14400 > th dose independent rect. 19 4
15 105.73 humidity 90.0 43200 > th dose dependent rect. 9 10
18 105.83 humidity 90.0 43200 > th dose independent rect. 9 5
22 106.00 wind 5.0 43200 < th dose independent rect. 4 5
26 106.14 precipitation 0.1 43200 > th dose independent rect. 6 3
28 106.16 precipitation 0.1 43200 > th dose dependent rect. 6 3
29 106.17 wind 5.0 43200 > th dose independent rect. 4 5
40 106.38 precipitation 0.1 43200 > th dose dependent rect. 5 9
41 106.41 precipitation 0.1 43200 > th dose dependent rect. 5 6
42 106.42 temperature 25.0 14400 > th dose dependent rect. 22 1
48 106.47 temperature 25.0 14400 > th dose dependent rect. 21 12
54 106.56 temperature 25.0 14400 > th dose dependent rect. 21 3
58 106.58 humidity 90.0 43200 > th dose dependent rect. 16 3
61 106.59 precipitation 0.1 43200 > th dose independent rect. 5 6
62 106.59 wind 3.0 43200 > th dose dependent rect. 2 7
64 106.60 precipitation 0.1 43200 < th dose independent rect. 5 6
66 106.60 precipitation 0.1 43200 < th dose dependent rect. 5 6
70 106.63 temperature 30.0 14400 < th dose independent rect. 10 2
71 106.63 precipitation 0.1 43200 < th dose independent rect. 6 4
74 106.63 precipitation 0.1 43200 < th dose dependent rect. 6 4
92 106.76 temperature 30.0 14400 < th dose independent rect. 18 18
95 106.77 precipitation 0.1 43200 < th dose independent rect. 3 15
97 106.77 precipitation 0.1 43200 < th dose dependent rect. 3 15
100 106.79 precipitation 0.1 43200 > th dose independent rect. 3 15
110 106.83 temperature 30.0 14400 > th dose independent rect. 10 2
159 106.98 wind 9.0 43200 < th dose dependent rect. 3 2
174 107.00 temperature 30.0 14400 > th dose independent rect. 18 19
184 107.04 humidity 90.0 43200 < th dose independent rect. 9 5
185 107.04 precipitation 0.1 43200 > th dose independent rect. 5 9
188 107.05 temperature 30.0 14400 < th dose independent rect. 7 6
192 107.05 temperature 30.0 14400 < th dose independent rect. 22 15
195 107.05 precipitation 0.1 43200 > th dose dependent sin 2 NA
199 107.06 temperature 30.0 14400 < th dose independent rect. 24 13
213 107.09 humidity 90.0 14400 < th dose dependent rect. 21 2
226 107.12 temperature 25.0 14400 > th dose dependent rect. 1 7
267 107.21 precipitation 0.1 43200 < th dose independent rect. 5 9
268 107.21 precipitation 0.1 43200 < th dose dependent rect. 5 9
283 107.26 humidity 70.0 14400 < th dose independent rect. 18 13
313 107.30 temperature 25.0 14400 > th dose dependent sin 10 NA
314 107.31 humidity 70.0 14400 < th dose independent rect. 19 1
321 107.31 humidity 70.0 43200 > th dose dependent rect. 9 2
340 107.37 humidity 70.0 14400 < th dose independent rect. 18 4
353 107.38 temperature 30.0 14400 < th dose independent sin 9 NA
362 107.40 wind 3.0 43200 > th dose dependent rect. 7 2
390 107.44 precipitation 0.1 43200 > th dose dependent rect. 3 14
421 107.49 temperature 30.0 14400 > th dose dependent rect. 16 20
439 107.55 wind 1.0 43200 > th dose dependent rect. 3 2
456 107.59 precipitation 0.1 43200 > th dose independent rect. 23 19
457 107.59 precipitation 0.1 43200 < th dose independent rect. 23 19
461 107.59 precipitation 0.1 43200 < th dose dependent rect. 23 19
463 107.60 precipitation 0.1 43200 > th dose independent sin 3 NA
472 107.61 precipitation 0.1 43200 < th dose independent sin 3 NA
475 107.61 precipitation 0.1 43200 < th dose dependent sin 3 NA
476 107.62 temperature 30.0 14400 > th dose independent sin 9 NA
514 107.69 wind 5.0 43200 < th dose independent rect. 7 1
520 107.70 temperature 25.0 14400 > th dose dependent rect. 9 1
537 107.75 humidity 80.0 14400 > th dose dependent rect. 22 1
545 107.77 precipitation 0.1 43200 > th dose dependent rect. 23 19
548 107.78 humidity 70.0 43200 > th dose dependent rect. 8 4
560 107.81 radiation 30.0 14400 < th dose independent rect. 15 18
566 107.82 radiation 20.0 14400 > th dose dependent rect. 16 16
581 107.85 temperature 30.0 14400 > th dose dependent sin 14 NA
588 107.85 temperature 30.0 14400 > th dose dependent rect. 10 9
598 107.85 precipitation 0.1 43200 > th dose dependent rect. 19 16
653 107.88 temperature 30.0 14400 > th dose dependent no NA NA
758 107.90 humidity 50.0 14400 > th dose dependent rect. 22 1
788 107.93 precipitation 0.1 43200 > th dose independent rect. 19 15
796 107.94 precipitation 0.1 43200 < th dose independent rect. 19 15
809 107.94 precipitation 0.1 43200 < th dose dependent rect. 19 15
832 107.98 wind 5.0 43200 > th dose independent rect. 7 1
834 107.98 precipitation 0.1 43200 < th dose independent rect. 23 21
838 107.98 precipitation 0.1 43200 < th dose dependent rect. 23 21
841 107.99 precipitation 0.1 43200 < th dose independent rect. 16 18
845 107.99 precipitation 0.1 43200 < th dose dependent rect. 16 18
852 108.00 temperature 30.0 14400 > th dose dependent rect. 15 4
870 108.01 precipitation 0.1 43200 > th dose independent rect. 16 18
879 108.02 precipitation 0.1 43200 > th dose independent rect. 23 21
900 108.04 temperature 30.0 14400 > th dose dependent rect. 11 2