BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0188600 Os06g0188600|J090071I05
(98 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0188600 Conserved hypothetical protein 201 1e-52
Os06g0188700 129 6e-31
Os06g0190700 Ionotropic glutamate receptor family protein 127 2e-30
Os06g0189100 124 1e-29
Os06g0190800 Ionotropic glutamate receptor family protein 94 2e-20
Os02g0787600 Ionotropic glutamate receptor family protein 84 3e-17
Os09g0431200 GPCR, family 3, metabotropic glutamate recepto... 78 2e-15
Os06g0680500 Similar to Glutamate receptor 3.4 precursor (L... 72 8e-14
Os07g0103100 Similar to Glutamate receptor 3.4 precursor (L... 71 2e-13
Os09g0431100 GPCR, family 3, metabotropic glutamate recepto... 70 5e-13
Os09g0429500 69 5e-13
Os09g0429400 GPCR, family 3, metabotropic glutamate recepto... 69 7e-13
Os09g0429000 69 1e-12
Os02g0117500 Similar to Glutamate receptor 3.3 precursor (L... 64 3e-11
>Os06g0188600 Conserved hypothetical protein
Length = 98
Score = 201 bits (510), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 98/98 (100%), Positives = 98/98 (100%)
Query: 1 MPYTQSGLSILVLAEKYSKPRIQWIFIKPLTWQLWLAAVSSFLYIAFVVWMIERPRNQEY 60
MPYTQSGLSILVLAEKYSKPRIQWIFIKPLTWQLWLAAVSSFLYIAFVVWMIERPRNQEY
Sbjct: 1 MPYTQSGLSILVLAEKYSKPRIQWIFIKPLTWQLWLAAVSSFLYIAFVVWMIERPRNQEY 60
Query: 61 QGSSSRQISTSLYFAFSTMTFSHGYNSHLKHADLFIIL 98
QGSSSRQISTSLYFAFSTMTFSHGYNSHLKHADLFIIL
Sbjct: 61 QGSSSRQISTSLYFAFSTMTFSHGYNSHLKHADLFIIL 98
>Os06g0188700
Length = 702
Score = 129 bits (323), Expect = 6e-31, Method: Composition-based stats.
Identities = 59/84 (70%), Positives = 67/84 (79%), Gaps = 1/84 (1%)
Query: 1 MPYTQSGLSILVLAEKYSKPRIQWIFIKPLTWQLWLAAVSSFLYIAFVVWMIERPRNQEY 60
MPYT SG+S+LV E SKP IQWIF+KPLT LWLA + F Y FVVWMIE+PRN EY
Sbjct: 306 MPYTSSGVSLLVPEENDSKP-IQWIFVKPLTRDLWLATIGFFFYTGFVVWMIEQPRNPEY 364
Query: 61 QGSSSRQISTSLYFAFSTMTFSHG 84
QGSS RQ+ST+ YFAFST+TFSHG
Sbjct: 365 QGSSVRQLSTASYFAFSTLTFSHG 388
>Os06g0190700 Ionotropic glutamate receptor family protein
Length = 566
Score = 127 bits (318), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 57/85 (67%), Positives = 71/85 (83%)
Query: 1 MPYTQSGLSILVLAEKYSKPRIQWIFIKPLTWQLWLAAVSSFLYIAFVVWMIERPRNQEY 60
MPYT+SG+S+LVL E SK I+W+F+KPLT +LW+A V FL+ V+WMIERPRN EY
Sbjct: 195 MPYTESGVSMLVLMENDSKSTIEWVFLKPLTRELWVATVIFFLFTGIVIWMIERPRNLEY 254
Query: 61 QGSSSRQISTSLYFAFSTMTFSHGY 85
QGSSSRQ ST+LYF+FST+TFSHG+
Sbjct: 255 QGSSSRQFSTALYFSFSTLTFSHGH 279
>Os06g0189100
Length = 397
Score = 124 bits (311), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 59/84 (70%), Positives = 67/84 (79%), Gaps = 1/84 (1%)
Query: 1 MPYTQSGLSILVLAEKYSKPRIQWIFIKPLTWQLWLAAVSSFLYIAFVVWMIERPRNQEY 60
MPYT SG+S+LV E SKP IQWIF+KPLT LWLA + F Y FVVWMIE+PRN EY
Sbjct: 1 MPYTSSGVSLLVPEENDSKP-IQWIFVKPLTRDLWLATIGFFFYTGFVVWMIEQPRNPEY 59
Query: 61 QGSSSRQISTSLYFAFSTMTFSHG 84
QGSS RQ+ST+ YFAFST+TFSHG
Sbjct: 60 QGSSVRQLSTASYFAFSTLTFSHG 83
>Os06g0190800 Ionotropic glutamate receptor family protein
Length = 682
Score = 94.4 bits (233), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 43/84 (51%), Positives = 61/84 (72%), Gaps = 1/84 (1%)
Query: 1 MPYTQSGLSILVLAEKYSKPRIQWIFIKPLTWQLWLAAVSSFLYIAFVVWMIERPRNQEY 60
MPYT+SG+S+LVL++ +P WIF++PL LW+A + + VVW+IERP N+++
Sbjct: 342 MPYTESGVSMLVLSKSDDEP-TTWIFLQPLAKDLWIATMIFIFFTGLVVWVIERPINRDF 400
Query: 61 QGSSSRQISTSLYFAFSTMTFSHG 84
QGS +Q T+ YFAFST+TFSHG
Sbjct: 401 QGSKWKQCITAFYFAFSTLTFSHG 424
>Os02g0787600 Ionotropic glutamate receptor family protein
Length = 988
Score = 83.6 bits (205), Expect = 3e-17, Method: Composition-based stats.
Identities = 37/83 (44%), Positives = 58/83 (69%), Gaps = 1/83 (1%)
Query: 1 MPYTQSGLSILVLAEKYSKPRIQWIFIKPLTWQLWLAAVSSFLYIAFVVWMIERPRNQEY 60
MP+T+SG S++V +K + + WIF++PLT LWLA+++ F + FVVW+IE N+E+
Sbjct: 555 MPFTESGWSMVVAVQKETSTSM-WIFLQPLTTSLWLASLAFFCFTGFVVWVIEHRINEEF 613
Query: 61 QGSSSRQISTSLYFAFSTMTFSH 83
+G+ +Q YF+FST+ FSH
Sbjct: 614 RGTPWQQFGLIFYFSFSTLVFSH 636
>Os09g0431200 GPCR, family 3, metabotropic glutamate receptor-like protein
Length = 950
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Query: 1 MPYTQSGLSILVLAEKYSKPRIQWIFIKPLTWQLWLAAVSSFLYIAFVVWMIERPRNQEY 60
+PYT+SG+ +LV + + + W F++PLT LWL + F+ FVVW IE N+++
Sbjct: 558 LPYTESGVRMLVPVQD-QRQKTAWTFLQPLTADLWLGTAAFFVLTGFVVWFIEHRTNEDF 616
Query: 61 QGSSSRQISTSLYFAFSTMTFSH 83
+G QI + YFAFST+ F+H
Sbjct: 617 RGPPVNQIGSVFYFAFSTLVFAH 639
>Os06g0680500 Similar to Glutamate receptor 3.4 precursor (Ligand-gated ion
channel 3.4) (AtGLR4). Splice isoform 2
Length = 890
Score = 72.0 bits (175), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Query: 2 PYTQSGLSILVLAEKYSKPRIQWIFIKPLTWQLWLAAVSSFLYIAFVVWMIERPRNQEYQ 61
PY +SGL I+V ++ S W F+KP T ++W F+++ VVW++E N+E++
Sbjct: 514 PYIESGLVIVVPVKEASSS--AWAFLKPFTLEMWCVTGVLFIFVGIVVWILEHRTNEEFR 571
Query: 62 GSSSRQISTSLYFAFSTMTFSHGYNS 87
GS RQ+ T +F+FSTM F+H N+
Sbjct: 572 GSPRRQMITIFWFSFSTMFFAHRQNT 597
>Os07g0103100 Similar to Glutamate receptor 3.4 precursor (Ligand-gated ion
channel 3.4) (AtGLR4). Splice isoform 2
Length = 956
Score = 70.9 bits (172), Expect = 2e-13, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Query: 2 PYTQSGLSILVLAEKYSKPRIQWIFIKPLTWQLWLAAVSSFLYIAFVVWMIERPRNQEYQ 61
PY +SGL I+ + + W F+KP T ++W FL++ VVW++E N +++
Sbjct: 564 PYVESGLVIVTAVRERASS--AWAFLKPFTREMWAVTGGFFLFVGAVVWVLEHRSNTDFR 621
Query: 62 GSSSRQISTSLYFAFSTMTFSHGYNS 87
GS +Q+ T +F+FSTM F+H N+
Sbjct: 622 GSPRKQLVTVFWFSFSTMFFAHRENT 647
>Os09g0431100 GPCR, family 3, metabotropic glutamate receptor-like protein
Length = 955
Score = 69.7 bits (169), Expect = 5e-13, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 1 MPYTQSGLSILV-LAEKYSKPRIQWIFIKPLTWQLWLAAVSSFLYIAFVVWMIERPRNQE 59
+P+ SG++++ L + W+F+KPL + LWLA+ + L F VW +E N E
Sbjct: 545 LPFMASGIAMVAPLRDVGRGGERTWVFLKPLRYDLWLASAAFLLLTGFAVWFVEHRGNAE 604
Query: 60 YQGSSSRQISTSLYFAFSTMTFSH 83
++G Q+ T LYF FST+ F+H
Sbjct: 605 FRGPPWHQLGTLLYFGFSTLVFAH 628
>Os09g0429500
Length = 914
Score = 69.3 bits (168), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 52/77 (67%), Gaps = 2/77 (2%)
Query: 1 MPYTQSGLSILVLAEKYSKPRIQWIFIKPLTWQLWLAAVSSFLYIAFVVWMIERP-RNQE 59
+PYT+SG++++V K + + W+F+KPLT LW +++ F+Y A V+W++ER N E
Sbjct: 521 LPYTESGVAMIVPV-KDDRDKNTWVFLKPLTTDLWFGSIAFFIYTAIVIWLLERRINNAE 579
Query: 60 YQGSSSRQISTSLYFAF 76
GS RQ+ ++YF+F
Sbjct: 580 LTGSFFRQLGIAIYFSF 596
>Os09g0429400 GPCR, family 3, metabotropic glutamate receptor-like protein
Length = 934
Score = 68.9 bits (167), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 52/77 (67%), Gaps = 2/77 (2%)
Query: 1 MPYTQSGLSILVLAEKYSKPRIQWIFIKPLTWQLWLAAVSSFLYIAFVVWMIERP-RNQE 59
+PYT+SG++++V K + + W+F+KPLT LW +++ F+Y A V+W++ER N E
Sbjct: 555 LPYTESGVAMIVPV-KDDRDKNTWVFLKPLTTGLWFGSIAFFIYTAVVIWLLERRINNAE 613
Query: 60 YQGSSSRQISTSLYFAF 76
GS RQ+ ++YF+F
Sbjct: 614 LTGSFFRQLGIAIYFSF 630
>Os09g0429000
Length = 1034
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 52/77 (67%), Gaps = 2/77 (2%)
Query: 1 MPYTQSGLSILVLAEKYSKPRIQWIFIKPLTWQLWLAAVSSFLYIAFVVWMIE-RPRNQE 59
+PYT+SG++++V + + + W+F+KPLT LW +++ F+Y A V+W++E R N E
Sbjct: 557 LPYTESGVAMIVPV-RDDRNKNTWVFLKPLTTDLWFGSIAFFVYTAIVIWLLERRSNNAE 615
Query: 60 YQGSSSRQISTSLYFAF 76
GS RQ+ ++YF+F
Sbjct: 616 LTGSFLRQLGIAIYFSF 632
>Os02g0117500 Similar to Glutamate receptor 3.3 precursor (Ligand-gated ion
channel 3.3)
Length = 944
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Query: 2 PYTQSGLSILVLAEKYSKPRIQWIFIKPLTWQLWLAAVSSFLYIAFVVWMIERPRNQEYQ 61
P+ +SGL IL +K+ W F++P T Q+W FL + VVW++E N E++
Sbjct: 562 PFIESGLVILAPVKKHIVN--SWAFLQPFTLQMWCVTGLFFLVVGAVVWVLEHRINDEFR 619
Query: 62 GSSSRQISTSLYFAFSTMTFSHGYNS 87
GS QI T +F+FST+ F+H N+
Sbjct: 620 GSPREQIITIFWFSFSTLFFAHRENT 645
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.326 0.135 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,184,447
Number of extensions: 101970
Number of successful extensions: 265
Number of sequences better than 1.0e-10: 14
Number of HSP's gapped: 256
Number of HSP's successfully gapped: 14
Length of query: 98
Length of database: 17,035,801
Length adjustment: 67
Effective length of query: 31
Effective length of database: 13,537,463
Effective search space: 419661353
Effective search space used: 419661353
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 149 (62.0 bits)