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Os02g0787600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Ionotropic glutamate receptor family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.5 (0.0408) R2 : 0.634
β1 : 2.66 (0.15) R2dD : 0.27 R2D : 0.104
β2 : 0.0259 (0.108) R2dC : 9.39e-05 R2C : -0.0433
β3 : -1.86 (0.132) R2dE : 0.21 R2E : 0.155
β4 : -5.09 (0.37) R2dD*C : 0.152 R2D*C : 0.0714
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.11 (0.087) R2dN8 : 0.166 R2N8 : 0.044
σ : 0.762
deviance : 267.68
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C
peak time of C : 11.2
E
wheather : humidity
threshold : 95.27
memory length : 996
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 16.1
open length of G : 4.57

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
264.26 0.764 11.6 2.36 0.162 -1.8 -5.73 -2.89 1.03 11.8 93.99 961 17.4 3.05
267.68 0.762 11.5 2.66 0.0259 -1.86 -5.09 -- 1.11 11.2 95.27 996 16.1 4.57
325.35 0.84 11.5 3.26 0.937 -2.45 -- 5.15 1.15 22.9 115.8 892 14.5 6.68
377.07 0.904 11.6 2.55 0.08 -1.96 -- -- 1.05 23.5 95.2 971 16.2 4.52
352.07 0.874 11.5 3.05 -- -1.72 -- 5.58 1.16 -- 130 968 13.7 6.94
379.84 0.914 11.6 2.63 0.94 -- -4.81 -- 1.05 12.8 -- -- -- --
465.43 1.01 11.6 2.46 1.09 -- -- -- 1.03 14.6 -- -- -- --
376.39 0.904 11.6 2.46 -- -1.92 -- -- 1.05 -- 95 969 16.5 4.18
498.01 1.04 11.6 -- 0.208 -2.5 -- -- 0.923 10.9 94.91 2322 17.8 4.52
534.73 1.08 11.6 2.41 -- -- -- -- 1 -- -- -- -- --
624.9 1.17 11.6 -- 1.04 -- -- -- 0.757 14.5 -- -- -- --
498.4 1.04 11.6 -- -- -2.55 -- -- 0.98 -- 95 2281 17.7 4.36
688.39 1.22 11.7 -- -- -- -- -- 0.736 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 282.76 humidity 70.0 14400 < th dose independent rect. 18 14
3 284.24 humidity 70.0 14400 > th dose independent rect. 19 13
4 284.54 humidity 80.0 720 < th dose dependent rect. 19 2
5 284.99 humidity 70.0 14400 < th dose independent rect. 17 5
18 285.98 humidity 90.0 720 < th dose dependent rect. 18 5
19 286.75 wind 1.0 14400 < th dose dependent rect. 4 1
20 286.85 humidity 70.0 14400 < th dose dependent rect. 16 4
49 287.43 humidity 70.0 1440 > th dose independent sin 12 NA
68 288.54 humidity 70.0 14400 > th dose independent rect. 17 7
69 288.54 humidity 70.0 14400 > th dose independent rect. 17 10
80 288.76 humidity 70.0 1440 < th dose independent sin 12 NA
81 288.82 temperature 25.0 720 > th dose dependent rect. 18 5
86 289.05 humidity 50.0 1440 > th dose dependent rect. 6 17
90 289.26 humidity 70.0 4320 > th dose independent rect. 19 1
100 289.63 humidity 70.0 4320 > th dose independent rect. 19 5
103 289.67 humidity 80.0 1440 > th dose independent rect. 7 15
104 289.68 humidity 70.0 4320 > th dose independent rect. 19 9
119 289.89 humidity 90.0 1440 < th dose dependent rect. 16 22
123 289.99 humidity 80.0 720 < th dose independent rect. 19 2
174 290.89 humidity 80.0 1440 < th dose dependent sin 13 NA
181 290.98 humidity 90.0 1440 < th dose dependent rect. 6 17
189 291.10 temperature 30.0 43200 > th dose dependent rect. 18 1
249 291.48 humidity 50.0 1440 > th dose dependent sin 19 NA
251 291.48 humidity 80.0 1440 < th dose dependent rect. 16 18
258 291.52 temperature 25.0 720 > th dose dependent rect. 18 14
305 291.84 humidity 70.0 1440 > th dose independent rect. 17 21
311 291.86 humidity 80.0 1440 < th dose independent rect. 7 15
343 292.07 humidity 90.0 14400 < th dose dependent rect. 17 1
348 292.09 humidity 50.0 1440 > th dose dependent rect. 15 23
355 292.14 humidity 90.0 1440 < th dose dependent rect. 10 23
358 292.20 humidity 90.0 1440 < th dose dependent no NA NA
359 292.20 humidity 90.0 14400 < th dose dependent rect. 16 3
394 292.39 temperature 30.0 720 < th dose independent rect. 16 9
416 292.49 humidity 90.0 1440 < th dose dependent rect. 22 23
445 292.69 humidity 50.0 1440 > th dose dependent no NA NA
465 292.83 humidity 50.0 14400 > th dose dependent rect. 17 2
466 292.83 humidity 50.0 1440 > th dose dependent rect. 13 23
469 292.85 humidity 70.0 1440 > th dose independent rect. 15 19
483 292.92 humidity 50.0 1440 > th dose dependent rect. 10 23
487 292.95 temperature 30.0 1440 < th dose independent rect. 18 16
488 292.95 humidity 70.0 14400 < th dose dependent sin 12 NA
519 293.22 humidity 90.0 1440 < th dose dependent sin 18 NA
522 293.24 humidity 50.0 1440 > th dose dependent rect. 18 3
530 293.29 temperature 30.0 720 < th dose independent rect. 16 7
577 293.60 humidity 90.0 1440 < th dose dependent rect. 20 23
587 293.65 precipitation 0.1 43200 > th dose dependent rect. 19 2
597 293.68 humidity 70.0 1440 > th dose independent rect. 15 13
601 293.70 humidity 70.0 1440 > th dose independent rect. 15 10
609 293.75 wind 1.0 14400 < th dose independent rect. 4 2
610 293.75 humidity 70.0 1440 > th dose independent rect. 15 7
631 293.86 humidity 70.0 1440 < th dose independent rect. 15 18
646 293.96 humidity 70.0 1440 < th dose independent rect. 15 16
648 293.97 humidity 70.0 1440 < th dose independent rect. 15 5
761 294.51 humidity 70.0 1440 < th dose independent rect. 16 21
802 294.86 humidity 70.0 14400 < th dose independent sin 12 NA
803 294.86 humidity 70.0 1440 > th dose independent rect. 11 23
820 294.94 humidity 50.0 1440 > th dose dependent rect. 15 8
878 295.20 humidity 70.0 1440 > th dose independent rect. 18 14
957 295.43 temperature 30.0 1440 > th dose dependent rect. 17 18