Os06g0190800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ionotropic glutamate receptor family protein.
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Os06g0190800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ionotropic glutamate receptor family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 46.79 | 0.321 | 8.11 | -1.15 | 0.607 | 1.18 | -0.411 | -2.23 | -0.252 | 6.06 | 11.8 | 1068 | -- | -- |
| 50.47 | 0.331 | 8.06 | -0.706 | 0.553 | 1.1 | -0.653 | -- | -0.137 | 5.19 | -5.543 | 1358 | -- | -- |
| 47.18 | 0.32 | 8.11 | -1.15 | 0.598 | 1.18 | -- | -2.22 | -0.252 | 6.11 | 12.21 | 1084 | -- | -- |
| 51.31 | 0.334 | 8.05 | -0.697 | 0.573 | 1.15 | -- | -- | -0.133 | 6.01 | 6.525 | 1144 | -- | -- |
| 63.66 | 0.372 | 8.12 | -1.14 | -- | 1.23 | -- | -2.02 | -0.247 | -- | 14.03 | 1238 | -- | -- |
| 70.93 | 0.395 | 8.01 | -0.36 | 0.622 | -- | -0.672 | -- | 0.0632 | 4.9 | -- | -- | -- | -- |
| 72.05 | 0.398 | 8.01 | -0.357 | 0.62 | -- | -- | -- | 0.0667 | 5.07 | -- | -- | -- | -- |
| 67.07 | 0.381 | 8.07 | -0.711 | -- | 1.22 | -- | -- | -0.137 | -- | 8.877 | 1274 | -- | -- |
| 62.46 | 0.368 | 8.03 | -- | 0.58 | 0.854 | -- | -- | -0.0124 | 5.84 | 14.2 | 1115 | -- | -- |
| 92.2 | 0.449 | 8.02 | -0.335 | -- | -- | -- | -- | 0.0825 | -- | -- | -- | -- | -- |
| 75.42 | 0.406 | 8 | -- | 0.613 | -- | -- | -- | 0.107 | 5.09 | -- | -- | -- | -- |
| 78.66 | 0.413 | 8.04 | -- | -- | 0.92 | -- | -- | -0.015 | -- | 13.75 | 1260 | -- | -- |
| 95.16 | 0.455 | 8.01 | -- | -- | -- | -- | -- | 0.12 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.49 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 19 |
| 2 | 46.66 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 21 |
| 8 | 46.73 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 12 | 46.90 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 23 |
| 35 | 47.22 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 22 |
| 47 | 47.39 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 19 |
| 66 | 47.57 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 68 | 47.58 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 100 | 47.83 | temperature | 10 | 1440 | > th | dose dependent | rect. | 12 | 15 |
| 160 | 47.91 | temperature | 10 | 1440 | > th | dose dependent | sin | 17 | NA |
| 167 | 47.91 | temperature | 10 | 1440 | > th | dose dependent | rect. | 8 | 19 |
| 196 | 47.92 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 516 | 48.19 | temperature | 10 | 1440 | > th | dose dependent | sin | 1 | NA |
| 617 | 48.32 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 23 |
| 632 | 48.34 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 23 |
| 674 | 48.42 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 681 | 48.44 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 758 | 48.59 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 772 | 48.62 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 6 |
| 835 | 48.70 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 21 |
| 836 | 48.71 | temperature | 30 | 1440 | < th | dose dependent | sin | 15 | NA |
| 920 | 48.79 | temperature | 30 | 1440 | < th | dose dependent | rect. | 14 | 11 |
| 938 | 48.80 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 14 |