Os06g0680500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Glutamate receptor 3.4 precursor (Ligand-gated ion channel 3.4) (AtGLR4). Splice isoform 2.
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Os06g0680500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Glutamate receptor 3.4 precursor (Ligand-gated ion channel 3.4) (AtGLR4). Splice isoform 2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 173.79 | 0.619 | 10.2 | -0.85 | 5.6 | -1.23 | 3.28 | -0.367 | 0.0226 | 7.43 | 76 | 826 | -- | -- |
| 172.8 | 0.612 | 10.2 | -0.88 | 5.62 | -1.26 | 3.18 | -- | -0.0011 | 7.43 | 74 | 828 | -- | -- |
| 194.9 | 0.65 | 10.2 | -0.944 | 5.59 | -1.17 | -- | 1.81 | -0.0137 | 7.4 | 75.13 | 789 | -- | -- |
| 200.6 | 0.66 | 10.2 | -0.8 | 5.61 | -1.21 | -- | -- | -0.000608 | 7.42 | 74.85 | 820 | -- | -- |
| 1524.78 | 1.82 | 10.4 | -0.722 | -- | -1.73 | -- | 1.95 | -0.0393 | -- | 81 | 2837 | -- | -- |
| 201.3 | 0.665 | 10.2 | -0.739 | 5 | -- | 3.05 | -- | 0.0727 | 7.27 | -- | -- | -- | -- |
| 226.29 | 0.704 | 10.2 | -0.674 | 5 | -- | -- | -- | 0.0663 | 7.26 | -- | -- | -- | -- |
| 1517.13 | 1.81 | 10.3 | -0.456 | -- | -1.17 | -- | -- | 0.141 | -- | 83.06 | 1352 | -- | -- |
| 217.44 | 0.687 | 10.2 | -- | 5.53 | -1.06 | -- | -- | 0.108 | 7.4 | 75.51 | 811 | -- | -- |
| 1553.48 | 1.84 | 10.3 | -0.585 | -- | -- | -- | -- | 0.152 | -- | -- | -- | -- | -- |
| 238.26 | 0.722 | 10.2 | -- | 5 | -- | -- | -- | 0.141 | 7.26 | -- | -- | -- | -- |
| 1519.2 | 1.82 | 10.3 | -- | -- | -1.73 | -- | -- | 0.0915 | -- | 83.85 | 1373 | -- | -- |
| 1562.52 | 1.85 | 10.3 | -- | -- | -- | -- | -- | 0.217 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 168.25 | humidity | 80.0 | 720 | < th | dose independent | rect. | 10 | 11 |
| 5 | 169.55 | humidity | 80.0 | 720 | > th | dose independent | rect. | 11 | 13 |
| 25 | 171.53 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 11 | 13 |
| 26 | 171.58 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 34 | 171.93 | humidity | 80.0 | 720 | > th | dose independent | sin | 20 | NA |
| 42 | 172.21 | humidity | 80.0 | 720 | < th | dose independent | sin | 20 | NA |
| 44 | 172.29 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 55 | 172.75 | humidity | 80.0 | 720 | > th | dose independent | rect. | 6 | 18 |
| 61 | 172.89 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 83 | 173.47 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 9 | 2 |
| 84 | 173.47 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 2 |
| 94 | 173.63 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 10 |
| 98 | 173.74 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 9 | 8 |
| 99 | 173.76 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 21 | 8 |
| 105 | 173.86 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 8 | 7 |
| 116 | 174.01 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 148 | 174.51 | humidity | 70.0 | 720 | > th | dose dependent | sin | 19 | NA |
| 172 | 174.82 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 12 | 5 |
| 202 | 175.09 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 203 | 175.09 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 215 | 175.18 | humidity | 70.0 | 720 | > th | dose independent | rect. | 13 | 20 |
| 221 | 175.24 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 7 | 9 |
| 232 | 175.37 | humidity | 80.0 | 720 | > th | dose independent | rect. | 11 | 21 |
| 243 | 175.47 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 254 | 175.53 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 21 | 8 |
| 262 | 175.57 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 9 | 6 |
| 303 | 175.93 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 6 | 18 |
| 304 | 175.94 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 12 | 5 |
| 307 | 175.94 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 12 | 5 |
| 321 | 176.01 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 339 | 176.10 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 12 | 3 |
| 341 | 176.10 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 12 | 3 |
| 374 | 176.35 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 12 | 5 |
| 375 | 176.36 | humidity | 80.0 | 720 | < th | dose independent | rect. | 16 | 5 |
| 487 | 176.92 | humidity | 80.0 | 1440 | < th | dose independent | sin | 2 | NA |
| 505 | 176.96 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 16 | 23 |
| 506 | 176.96 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 16 | 23 |
| 532 | 177.10 | humidity | 90.0 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 592 | 177.47 | humidity | 80.0 | 1440 | > th | dose independent | sin | 1 | NA |
| 615 | 177.58 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 637 | 177.69 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 639 | 177.69 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 683 | 177.86 | humidity | 70.0 | 720 | > th | dose independent | rect. | 15 | 2 |
| 702 | 177.98 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 19 | 2 |
| 708 | 178.02 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 710 | 178.02 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 717 | 178.03 | humidity | 70.0 | 270 | > th | dose dependent | rect. | 12 | 20 |
| 721 | 178.05 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 722 | 178.05 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 18 | 3 |
| 730 | 178.08 | humidity | 90.0 | 30 | < th | dose independent | rect. | 10 | 18 |
| 738 | 178.13 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 9 | 5 |
| 744 | 178.14 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 5 | 13 |
| 759 | 178.18 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 761 | 178.19 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 772 | 178.23 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 19 | 10 |
| 777 | 178.26 | humidity | 80.0 | 720 | > th | dose independent | no | NA | NA |
| 783 | 178.28 | humidity | 70.0 | 720 | > th | dose independent | rect. | 14 | 4 |
| 808 | 178.40 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 19 | 9 |
| 815 | 178.45 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 9 | 6 |
| 820 | 178.49 | humidity | 80.0 | 720 | > th | dose independent | rect. | 21 | 23 |
| 848 | 178.57 | humidity | 80.0 | 720 | < th | dose independent | rect. | 16 | 23 |
| 862 | 178.66 | humidity | 80.0 | 720 | < th | dose independent | no | NA | NA |
| 920 | 178.87 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 925 | 178.87 | humidity | 80.0 | 720 | > th | dose independent | rect. | 17 | 23 |
| 930 | 178.89 | humidity | 80.0 | 10 | > th | dose independent | rect. | 13 | 7 |
| 936 | 178.91 | radiation | 1.0 | 270 | < th | dose independent | rect. | 11 | 7 |
| 939 | 178.92 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 979 | 179.06 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 13 | 15 |