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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0429400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : GPCR, family 3, metabotropic glutamate receptor-like protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.03 (0.0282) R2 : 1.13e-06
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.00135 (0.0593) R2dN8 : 1.46e-06 R2N8 : 1.13e-06
σ : 0.531
deviance : 129.2
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
111.99 0.497 3.01 0.32 0.0939 0.758 -0.00399 0.862 0.134 14.4 1012 4942 -- --
113.77 0.497 2.99 0.537 0.094 0.724 -0.0466 -- 0.176 14.4 1012 4911 -- --
111.94 0.493 3.02 0.333 0.0935 0.787 -- 0.941 0.136 14.3 1012 5475 -- --
113.72 0.497 2.99 0.511 0.0944 0.698 -- -- 0.175 14.3 1012 4801 -- --
112.47 0.494 3.02 0.328 -- 0.79 -- 0.942 0.134 -- 1012 5475 -- --
126.42 0.527 3.02 0.286 0.109 -- -0.0189 -- 0.0328 14.8 -- -- -- --
126.42 0.527 3.02 0.286 0.109 -- -- -- 0.0326 14.7 -- -- -- --
114.23 0.498 2.99 0.503 -- 0.688 -- -- 0.173 -- 1012 4635 -- --
119.82 0.51 3.01 -- 0.0917 0.542 -- -- 0.092 14.4 1012 4616 -- --
127.11 0.527 3.03 0.281 -- -- -- -- 0.0299 -- -- -- -- --
128.57 0.53 3.03 -- 0.103 -- -- -- 0.000786 14.7 -- -- -- --
118.3 0.507 3.01 -- -- 0.519 -- -- 0.0847 -- 1014 5499 -- --
129.2 0.531 3.03 -- -- -- -- -- -0.00135 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 109.81 radiation 1 14400 > th dose independent rect. 15 2
2 109.85 radiation 1 14400 < th dose independent rect. 15 2
3 109.85 atmosphere 1015 43200 < th dose independent rect. 19 3
4 109.88 atmosphere 1015 43200 < th dose independent rect. 20 1
8 109.88 atmosphere 1015 43200 < th dose independent rect. 19 6
10 109.90 atmosphere 1015 43200 > th dose independent rect. 21 1
51 110.02 atmosphere 1015 43200 < th dose independent rect. 24 1
55 110.03 atmosphere 1015 43200 < th dose independent sin 13 NA
77 110.07 atmosphere 1015 43200 > th dose independent rect. 19 10
93 110.08 atmosphere 1015 43200 < th dose independent rect. 12 19
113 110.10 atmosphere 1015 43200 < th dose independent rect. 19 20
159 110.14 atmosphere 1015 43200 < th dose independent rect. 12 13
206 110.17 atmosphere 1015 43200 < th dose independent rect. 5 20
214 110.18 atmosphere 1015 43200 > th dose independent sin 12 NA
217 110.18 atmosphere 1015 43200 > th dose independent rect. 24 1
267 110.21 atmosphere 1015 43200 < th dose independent no NA NA
273 110.21 atmosphere 1015 43200 > th dose independent rect. 19 19
317 110.23 atmosphere 1015 43200 > th dose independent rect. 12 20
366 110.26 atmosphere 1010 14400 > th dose dependent rect. 16 1
425 110.30 atmosphere 1015 43200 > th dose independent rect. 3 22
494 110.35 atmosphere 1015 43200 > th dose independent no NA NA
503 110.36 atmosphere 1015 43200 > th dose independent rect. 3 5
521 110.37 atmosphere 1015 43200 < th dose independent rect. 4 3
534 110.37 atmosphere 1015 43200 > th dose dependent rect. 5 8
540 110.38 atmosphere 1015 43200 > th dose independent rect. 5 1
625 110.41 atmosphere 1015 43200 > th dose dependent rect. 9 3
638 110.42 atmosphere 1015 43200 > th dose dependent sin 4 NA
700 110.45 atmosphere 1015 43200 > th dose dependent rect. 6 1
746 110.49 atmosphere 1015 43200 < th dose independent rect. 3 12
816 110.53 atmosphere 1015 43200 > th dose dependent rect. 1 7
817 110.53 atmosphere 1015 43200 > th dose dependent rect. 23 9
841 110.55 atmosphere 1015 43200 < th dose independent rect. 12 1
848 110.55 atmosphere 1015 43200 > th dose independent rect. 3 11
939 110.60 atmosphere 1015 43200 > th dose independent rect. 12 1
940 110.60 atmosphere 1015 43200 > th dose independent rect. 11 3
996 110.64 atmosphere 1010 14400 > th dose independent rect. 15 1