BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0147100 Os06g0147100|AK119696
(119 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0147100 Conserved hypothetical protein 162 4e-41
Os01g0238200 Conserved hypothetical protein 82 1e-16
Os06g0580100 Conserved hypothetical protein 80 3e-16
Os02g0216300 Conserved hypothetical protein 78 1e-15
Os06g0147400 Conserved hypothetical protein 70 3e-13
Os06g0146800 Conserved hypothetical protein 70 4e-13
Os06g0147000 Conserved hypothetical protein 64 2e-11
Os06g0146600 Conserved hypothetical protein 62 8e-11
>Os06g0147100 Conserved hypothetical protein
Length = 119
Score = 162 bits (411), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 88/119 (73%), Positives = 88/119 (73%)
Query: 1 MDPNGRSAWISRAGLGILTVNSGLAIYRSRGDAAAVAFVLGSYTXXXXXXXXXXXXERAP 60
MDPNGRSAWISRAGLGILTVNSGLAIYRSRGDAAAVAFVLGSYT ERAP
Sbjct: 1 MDPNGRSAWISRAGLGILTVNSGLAIYRSRGDAAAVAFVLGSYTALLLLFSCLSAFERAP 60
Query: 61 PGSPARGRLKRAVWALSTLVTAMFAWKXXXXXXXXXXXXXXXXXXXTSLGGFLAFFIYT 119
PGSPARGRLKRAVWALSTLVTAMFAWK TSLGGFLAFFIYT
Sbjct: 61 PGSPARGRLKRAVWALSTLVTAMFAWKVAALMPPPVAAVVWALAVATSLGGFLAFFIYT 119
>Os01g0238200 Conserved hypothetical protein
Length = 122
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 59/118 (50%)
Query: 1 MDPNGRSAWISRAGLGILTVNSGLAIYRSRGDAAAVAFVLGSYTXXXXXXXXXXXXERAP 60
MD GR W+ G L+ N G+AIYRS D +AVAFV+ +Y ERAP
Sbjct: 1 MDRGGRPGWLPSLGFAFLSFNCGMAIYRSSSDPSAVAFVVVAYLALIALFRCLHLLERAP 60
Query: 61 PGSPARGRLKRAVWALSTLVTAMFAWKXXXXXXXXXXXXXXXXXXXTSLGGFLAFFIY 118
G AR +K AVW LSTL+T MF++K T + GF AFF++
Sbjct: 61 AGGQARASMKAAVWGLSTLLTLMFSYKVAAIMPLWGAAGVWVMGLGTIVAGFYAFFVH 118
>Os06g0580100 Conserved hypothetical protein
Length = 150
Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 59/117 (50%)
Query: 2 DPNGRSAWISRAGLGILTVNSGLAIYRSRGDAAAVAFVLGSYTXXXXXXXXXXXXERAPP 61
D G +W++ G G LT NSG+AIYRS GD +VAFVL SY E+AP
Sbjct: 22 DNEGGFSWLTALGFGFLTFNSGMAIYRSDGDRGSVAFVLTSYIDLVLLFACLRLFEKAPR 81
Query: 62 GSPARGRLKRAVWALSTLVTAMFAWKXXXXXXXXXXXXXXXXXXXTSLGGFLAFFIY 118
S R LK VW L+TL+T MF++K T GGF AFF++
Sbjct: 82 DSARREWLKVFVWGLTTLLTVMFSYKVAAIMPPVVAVIVWAMAFATIGGGFYAFFVH 138
>Os02g0216300 Conserved hypothetical protein
Length = 159
Score = 77.8 bits (190), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 57/110 (51%)
Query: 10 ISRAGLGILTVNSGLAIYRSRGDAAAVAFVLGSYTXXXXXXXXXXXXERAPPGSPARGRL 69
++ G LT NSG+A+YRS D A + FV+ SY E+ PP SP R +
Sbjct: 39 LTLLGFAFLTFNSGMAVYRSDRDLATIFFVVFSYVDLVSLFYFLRLFEKTPPESPRRHHI 98
Query: 70 KRAVWALSTLVTAMFAWKXXXXXXXXXXXXXXXXXXXTSLGGFLAFFIYT 119
K AVW L+T++TA+F++K T LGGF AFF+++
Sbjct: 99 KTAVWLLTTMLTAVFSYKVAAIMPFPVQVLVWAMAAATVLGGFYAFFLHS 148
>Os06g0147400 Conserved hypothetical protein
Length = 140
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 55/113 (48%)
Query: 6 RSAWISRAGLGILTVNSGLAIYRSRGDAAAVAFVLGSYTXXXXXXXXXXXXERAPPGSPA 65
R W S G L +N L IYR+ GD A+AFV +Y ++AP GS A
Sbjct: 25 RVPWASLIGFVALAINFALCIYRAEGDRGAIAFVTFAYLNLLLLFWCIRQFDQAPHGSAA 84
Query: 66 RGRLKRAVWALSTLVTAMFAWKXXXXXXXXXXXXXXXXXXXTSLGGFLAFFIY 118
RGR++ AVW L+T +TA+F WK T +GGF FFI+
Sbjct: 85 RGRIRAAVWILATSLTAVFTWKVAALMPLPVAAVAWVMAAATVVGGFYGFFIH 137
>Os06g0146800 Conserved hypothetical protein
Length = 115
Score = 70.1 bits (170), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 58/117 (49%), Gaps = 4/117 (3%)
Query: 1 MDPNGRSAWISRAGLGILTVNSGLAIYRSRGDAAAVAFVLGSYTXXXXXXXXXXXXERAP 60
MD + R +++ G G LT NS LAIYRSRGD A VAFV G+Y ER
Sbjct: 1 MDMD-RHGALTKLGFGALTFNSALAIYRSRGDPATVAFVAGAYAAIVLLFYFLLRFERR- 58
Query: 61 PGSPARGRLKRAVWALSTLVTAMFAWKXXXXXXXXXXXXXXXXXXXTSLGGFLAFFI 117
RGR K VW L+TL+TAMFA + TS+ GF AFF+
Sbjct: 59 --RDDRGRTKVVVWVLTTLLTAMFAARVAPLMPPLVAFVVWVMAAGTSVAGFWAFFL 113
>Os06g0147000 Conserved hypothetical protein
Length = 118
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 66/119 (55%), Gaps = 3/119 (2%)
Query: 1 MDPNGR-SAWISRAGLGILTVNSGLAIYRSRGDAAAVAFVLGSYTXXXXXXXXXXXXERA 59
MD N R S+ +++ G G LT NS AIYRS+GD A+VAFV+ +Y ERA
Sbjct: 1 MDHNDRHSSLLTKVGFGALTCNSIFAIYRSQGDLASVAFVVAAYAALLLLFYFLGKFERA 60
Query: 60 PPGSPARGRLKRAVWALSTLVTAMFAWKXXXXXXXXXXXXXXXXXXXTSLGGFLAFFIY 118
P RG++K AVW+L+TL+TAMFA + T +GGF AFF++
Sbjct: 61 RPEE--RGKVKAAVWSLTTLLTAMFASRVAPLMPPLVAAGVWIMAAATVVGGFWAFFLH 117
>Os06g0146600 Conserved hypothetical protein
Length = 122
Score = 62.0 bits (149), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 53/109 (48%), Gaps = 2/109 (1%)
Query: 10 ISRAGLGILTVNSGLAIYRSRGDAAAVAFVLGSYTXXXXXXXXXXXXERAPPGSPARGRL 69
+ RAGL +LT+ SG AIYR+ GDA A+AFV SY E A + R L
Sbjct: 12 LVRAGLLVLTLTSGAAIYRAAGDAGAIAFVATSYATLLLLFRYLRAYELA--AAAEREGL 69
Query: 70 KRAVWALSTLVTAMFAWKXXXXXXXXXXXXXXXXXXXTSLGGFLAFFIY 118
+R VW + T+VT +FAWK TS GGF+ F +
Sbjct: 70 RRKVWYICTVVTTLFAWKVAGVMPPAAAAAVWLLAVATSAGGFVVLFHH 118
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.136 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,269,292
Number of extensions: 94736
Number of successful extensions: 233
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 229
Number of HSP's successfully gapped: 10
Length of query: 119
Length of database: 17,035,801
Length adjustment: 85
Effective length of query: 34
Effective length of database: 12,597,611
Effective search space: 428318774
Effective search space used: 428318774
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 149 (62.0 bits)