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Os06g0146600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.18 (0.0562) R2 : 0.436
β1 : -0.721 (0.223) R2dD : 0.021 R2D : 0.013
β2 : 1.71 (0.126) R2dC : 0.232 R2C : 0.245
β3 : -1.15 (0.303) R2dE : 0.0297 R2E : -0.0107
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 7.48 (0.89) R2dD*E : 0.13 R2D*E : 0.0687
γ1 : -0.762 (0.106) R2dN8 : 0.0877 R2N8 : 0.0558
σ : 0.917
deviance : 387.27
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C
peak time of C : 16.1
E
wheather : radiation
threshold : 167.9
memory length : 4320
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 17
open length of G : 1.03

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
387.42 0.925 6.18 -0.737 1.7 -1.1 -0.203 7.27 -0.762 16.1 109.1 4320 17 1.05
448.8 0.994 6.4 -0.81 1.81 -0.391 -0.104 -- -0.856 16.2 146.3 4325 16.9 1.03
387.27 0.917 6.18 -0.721 1.71 -1.15 -- 7.48 -0.762 16.1 167.9 4320 17 1.03
444.45 0.982 6.39 -0.856 1.85 -0.492 -- -- -0.823 16.5 189.8 4585 17.2 1.26
541.2 1.08 6.18 -0.894 -- -0.878 -- 7.42 -0.762 -- 175.6 4319 17 1.01
451.03 0.996 6.4 -0.818 1.72 -- -0.102 -- -0.872 16.1 -- -- -- --
451.06 0.995 6.4 -0.819 1.72 -- -- -- -0.872 16.1 -- -- -- --
477.86 1.02 6.38 -0.831 -- -1.24 -- -- -0.752 -- 192.2 5270 18.6 1.97
449.77 0.988 6.48 -- 2.37 -1.35 -- -- -0.964 16.7 152.1 4675 15.6 1.25
612.09 1.16 6.39 -0.889 -- -- -- -- -0.918 -- -- -- -- --
468.74 1.01 6.38 -- 1.74 -- -- -- -0.781 16.1 -- -- -- --
495.83 1.04 6.36 -- -- -1.28 -- -- -0.739 -- 159.7 5269 18.5 2.25
632.92 1.17 6.37 -- -- -- -- -- -0.82 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 390.16 radiation 40 4320 < th dose dependent rect. 17 1
4 392.33 radiation 1 4320 > th dose dependent rect. 17 1
5 393.01 radiation 10 1440 < th dose dependent rect. 9 7
6 393.47 radiation 1 720 > th dose dependent rect. 18 11
20 394.43 radiation 20 1440 < th dose dependent rect. 11 2
22 394.73 radiation 10 1440 < th dose dependent rect. 9 17
24 394.76 radiation 10 1440 < th dose dependent rect. 9 14
26 394.77 radiation 10 1440 < th dose dependent rect. 9 11
29 394.78 radiation 10 1440 < th dose dependent rect. 9 19
40 395.90 radiation 10 1440 < th dose dependent rect. 11 19
42 396.05 temperature 10 43200 > th dose independent rect. 4 2
57 396.43 radiation 10 1440 < th dose dependent sin 20 NA
59 396.54 radiation 20 4320 < th dose independent rect. 17 6
60 396.66 radiation 10 1440 > th dose independent rect. 11 2
61 396.66 radiation 40 4320 < th dose dependent rect. 17 6
67 396.78 temperature 10 43200 < th dose dependent rect. 2 4
69 396.81 radiation 10 1440 < th dose dependent rect. 11 15
74 396.85 radiation 10 1440 < th dose dependent rect. 11 12
90 396.92 radiation 40 4320 < th dose dependent rect. 17 9
91 396.92 temperature 10 43200 < th dose dependent rect. 2 20
94 396.95 radiation 40 4320 < th dose dependent rect. 17 4
98 396.97 temperature 10 43200 < th dose dependent rect. 2 8
134 397.08 temperature 10 43200 < th dose dependent rect. 2 1
138 397.09 radiation 20 4320 < th dose independent rect. 17 4
147 397.19 temperature 10 43200 < th dose independent rect. 3 2
165 397.23 radiation 40 4320 < th dose dependent rect. 17 11
175 397.31 radiation 20 4320 < th dose independent rect. 17 13
232 398.21 temperature 10 43200 < th dose dependent sin 3 NA
239 398.28 temperature 10 43200 > th dose independent rect. 2 10
255 398.47 temperature 10 43200 < th dose independent rect. 2 19
264 398.56 temperature 10 43200 < th dose independent rect. 2 8
277 398.59 temperature 10 43200 > th dose independent rect. 2 19
280 398.60 temperature 10 43200 > th dose independent rect. 2 17
311 398.73 temperature 10 43200 < th dose dependent rect. 8 21
323 398.74 temperature 10 43200 < th dose dependent rect. 20 9
342 398.79 temperature 10 43200 > th dose independent rect. 20 10
351 398.89 temperature 10 43200 > th dose independent rect. 17 13
371 398.98 temperature 10 43200 > th dose independent rect. 9 21
515 399.64 radiation 20 4320 < th dose independent rect. 17 9
525 399.75 temperature 10 43200 < th dose independent sin 7 NA
599 399.99 radiation 1 1440 < th dose independent rect. 9 6
615 400.02 temperature 10 43200 > th dose independent sin 6 NA
626 400.07 temperature 10 43200 < th dose dependent no NA NA
715 400.08 radiation 1 1440 > th dose independent rect. 9 6
783 400.45 humidity 70 43200 < th dose independent rect. 22 9
858 400.63 temperature 10 43200 < th dose independent no NA NA
949 400.90 radiation 1 1440 < th dose independent rect. 12 3
968 400.94 temperature 10 43200 > th dose independent rect. 20 16
996 401.04 temperature 10 43200 > th dose independent rect. 17 19