BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0135000 Os06g0135000|AK067979
(61 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0135000 Similar to PPLZ12 protein 126 3e-30
Os06g0136000 Similar to Hypersensitive-induced reaction pro... 117 1e-27
Os09g0361200 Similar to Hypersensitive-induced reaction pro... 86 7e-18
Os08g0398400 Similar to Hypersensitive-induced response pro... 79 7e-16
Os05g0591900 Similar to Hypersensitive-induced response pro... 79 8e-16
Os10g0464000 Similar to Hypersensitive-induced response pro... 76 6e-15
Os01g0588400 Band 7 protein family protein 71 1e-13
>Os06g0135000 Similar to PPLZ12 protein
Length = 61
Score = 126 bits (317), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 61/61 (100%), Positives = 61/61 (100%)
Query: 1 DSTTAKEVMDLIMVTQYFDTIKELGDGSKNTTVFIPQGPGHVKDISEQIRNGMMEASSNN 60
DSTTAKEVMDLIMVTQYFDTIKELGDGSKNTTVFIPQGPGHVKDISEQIRNGMMEASSNN
Sbjct: 1 DSTTAKEVMDLIMVTQYFDTIKELGDGSKNTTVFIPQGPGHVKDISEQIRNGMMEASSNN 60
Query: 61 V 61
V
Sbjct: 61 V 61
>Os06g0136000 Similar to Hypersensitive-induced reaction protein 4
Length = 288
Score = 117 bits (294), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 54/59 (91%), Positives = 57/59 (96%)
Query: 3 TTAKEVMDLIMVTQYFDTIKELGDGSKNTTVFIPQGPGHVKDISEQIRNGMMEASSNNV 61
T+AKEVMDLIMVTQYFDTIKELGDGSKNTTVFIP GPGHV+DISEQIRNGMMEAS +NV
Sbjct: 230 TSAKEVMDLIMVTQYFDTIKELGDGSKNTTVFIPHGPGHVRDISEQIRNGMMEASCSNV 288
>Os09g0361200 Similar to Hypersensitive-induced reaction protein 2 (Fragment)
Length = 317
Score = 85.9 bits (211), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 34/56 (60%), Positives = 51/56 (91%)
Query: 3 TTAKEVMDLIMVTQYFDTIKELGDGSKNTTVFIPQGPGHVKDISEQIRNGMMEASS 58
TTAK++MD+++VTQYFDT+KE+G SK+T+VFIP GPG VKD++ QIR+G+++A++
Sbjct: 258 TTAKDIMDMVLVTQYFDTMKEIGASSKSTSVFIPHGPGAVKDVAAQIRDGLLQANA 313
>Os08g0398400 Similar to Hypersensitive-induced response protein
Length = 284
Score = 79.0 bits (193), Expect = 7e-16, Method: Composition-based stats.
Identities = 34/54 (62%), Positives = 48/54 (88%)
Query: 3 TTAKEVMDLIMVTQYFDTIKELGDGSKNTTVFIPQGPGHVKDISEQIRNGMMEA 56
T+AK+VMD+++VTQYFDT+KE+G SK+++VFIP GPG VKDI+ QIR+G ++A
Sbjct: 228 TSAKDVMDMVLVTQYFDTMKEIGASSKSSSVFIPHGPGAVKDIAAQIRDGQLQA 281
>Os05g0591900 Similar to Hypersensitive-induced response protein
Length = 288
Score = 79.0 bits (193), Expect = 8e-16, Method: Composition-based stats.
Identities = 32/56 (57%), Positives = 48/56 (85%)
Query: 3 TTAKEVMDLIMVTQYFDTIKELGDGSKNTTVFIPQGPGHVKDISEQIRNGMMEASS 58
TTAK+VMD++++TQYFDT+KE+G SK ++VFIP GPG V+DI+ QIR+G+++ +
Sbjct: 228 TTAKDVMDMVLITQYFDTMKEIGASSKASSVFIPHGPGAVRDIATQIRDGLLQGQA 283
>Os10g0464000 Similar to Hypersensitive-induced response protein
Length = 292
Score = 75.9 bits (185), Expect = 6e-15, Method: Composition-based stats.
Identities = 31/54 (57%), Positives = 46/54 (85%)
Query: 3 TTAKEVMDLIMVTQYFDTIKELGDGSKNTTVFIPQGPGHVKDISEQIRNGMMEA 56
T+AK+VMDL+++TQYFDT+KE+G SK++ +F+P GPG V DI+ QIR+G ++A
Sbjct: 235 TSAKDVMDLVLLTQYFDTMKEIGSTSKSSAIFLPHGPGAVADIASQIRDGCLQA 288
>Os01g0588400 Band 7 protein family protein
Length = 311
Score = 71.2 bits (173), Expect = 1e-13, Method: Composition-based stats.
Identities = 26/50 (52%), Positives = 44/50 (88%)
Query: 6 KEVMDLIMVTQYFDTIKELGDGSKNTTVFIPQGPGHVKDISEQIRNGMME 55
K+VMD+++VTQYFDTI+++G S+++TVFIP GP V+D++ Q+R+G+++
Sbjct: 247 KDVMDMVLVTQYFDTIRDIGATSRSSTVFIPHGPSAVRDMAAQVRDGLLQ 296
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.311 0.128 0.349
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,875,581
Number of extensions: 55140
Number of successful extensions: 93
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 7
Length of query: 61
Length of database: 17,035,801
Length adjustment: 33
Effective length of query: 28
Effective length of database: 15,312,739
Effective search space: 428756692
Effective search space used: 428756692
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 149 (62.0 bits)