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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0361200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Hypersensitive-induced reaction protein 2 (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.45 (0.0259) R2 : 0.259
β1 : -0.477 (0.101) R2dD : 0.0441 R2D : -0.0203
β2 : -- (--) R2dC : -- R2C : --
β3 : -0.00285 (0.263) R2dE : 4.17e-07 R2E : -0.000766
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -20.5 (2.44) R2dD*E : 0.283 R2D*E : 0.205
γ1 : -0.166 (0.0561) R2dN8 : 0.0202 R2N8 : -0.0132
σ : 0.477
deviance : 104.7
__
_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 1006
memory length : 45
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 2.15
open length of G : 0.96

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
103.06 0.477 3.45 -0.471 0.146 -0.0366 -0.469 -20.4 -0.166 6.91 1006 46 2.13 0.967
119.04 0.512 3.48 -0.142 0.147 1.58 -0.553 -- -0.169 6.63 1003 5 2.02 1.54
103.61 0.474 3.45 -0.481 0.146 -0.0423 -- -20.5 -0.166 6.48 1006 46 2.13 0.983
119.81 0.513 3.48 -0.151 0.145 1.59 -- -- -0.168 6.5 1004 2 2.06 1.73
104.7 0.477 3.45 -0.477 -- -0.00285 -- -20.5 -0.166 -- 1006 45 2.15 0.96
136.87 0.548 3.45 -0.15 0.232 -- -0.666 -- -0.0507 5.48 -- -- -- --
137.93 0.55 3.45 -0.153 0.228 -- -- -- -0.048 5.08 -- -- -- --
120.89 0.514 3.48 -0.147 -- 1.64 -- -- -0.168 -- 1004 2 2.06 1.73
120.41 0.514 3.47 -- 0.143 1.6 -- -- -0.151 6.56 1004 2 2.06 1.71
140.66 0.554 3.45 -0.144 -- -- -- -- -0.0422 -- -- -- -- --
138.55 0.551 3.45 -- 0.226 -- -- -- -0.031 5.1 -- -- -- --
121.46 0.515 3.48 -- -- 1.64 -- -- -0.152 -- 1004 2 2.06 1.71
141.21 0.555 3.45 -- -- -- -- -- -0.0262 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 103.73 temperature 20.0 30 > th dose dependent rect. 2 1
2 103.75 atmosphere 1005.0 30 > th dose dependent rect. 2 1
4 103.91 atmosphere 1005.0 30 > th dose independent rect. 2 1
8 104.06 wind 3.0 30 < th dose dependent rect. 2 1
11 104.11 temperature 20.0 30 > th dose independent rect. 2 1
14 104.24 wind 3.0 30 < th dose independent rect. 2 1
17 104.37 temperature 25.0 30 < th dose independent rect. 2 1
18 104.37 humidity 80.0 30 > th dose independent rect. 2 1
19 104.37 humidity 50.0 30 > th dose dependent rect. 2 1
23 104.40 temperature 10.0 30 > th dose independent rect. 2 1
26 104.40 humidity 50.0 30 > th dose independent rect. 2 1
30 104.40 atmosphere 1010.0 30 < th dose independent rect. 2 1
32 104.40 radiation 1.0 30 < th dose independent rect. 2 1
37 104.40 precipitation 0.1 30 < th dose independent rect. 2 1
38 104.40 temperature 10.0 30 > th dose independent rect. 3 23
39 104.40 radiation 1.0 30 < th dose dependent rect. 2 1
44 104.40 precipitation 0.1 30 < th dose dependent rect. 2 1
48 105.02 radiation 1.0 43200 < th dose dependent rect. 3 1
49 105.43 atmosphere 1015.0 30 < th dose dependent rect. 2 1
50 105.58 radiation 1.0 4320 < th dose dependent rect. 3 1
51 105.66 temperature 30.0 30 < th dose dependent rect. 2 1
67 106.44 wind 9.0 1440 < th dose independent rect. 3 1
68 106.44 temperature 10.0 1440 > th dose independent rect. 3 1
71 106.44 temperature 30.0 1440 < th dose independent rect. 3 1
75 106.44 humidity 50.0 1440 > th dose independent rect. 3 1
84 106.44 atmosphere 995.0 1440 > th dose independent rect. 3 1
85 106.44 radiation 1.0 1440 < th dose independent rect. 3 1
105 106.44 temperature 10.0 1440 > th dose independent rect. 4 23
113 106.62 wind 1.0 30 > th dose independent rect. 2 1
162 109.60 wind 9.0 30 < th dose independent rect. 3 23
165 109.99 atmosphere 995.0 30 > th dose independent rect. 3 23
168 110.41 precipitation 0.1 30 < th dose independent rect. 3 23
169 110.41 precipitation 0.1 30 < th dose dependent rect. 3 23
198 117.82 humidity 50.0 30 > th dose independent rect. 3 23
238 121.50 temperature 10.0 30 > th dose dependent rect. 3 23
248 122.33 humidity 90.0 90 < th dose independent rect. 2 1
251 122.59 temperature 30.0 30 < th dose independent rect. 3 23
260 123.33 humidity 50.0 720 > th dose independent rect. 23 16
264 123.68 temperature 25.0 270 > th dose independent rect. 23 4
298 125.47 temperature 25.0 270 > th dose dependent rect. 23 4
307 125.72 atmosphere 1015.0 30 < th dose independent rect. 3 23
308 125.73 precipitation 0.1 720 < th dose independent rect. 15 8
309 125.73 precipitation 0.1 720 < th dose dependent rect. 15 8
323 126.03 wind 3.0 10 < th dose dependent rect. 22 5
326 126.08 atmosphere 995.0 720 > th dose independent rect. 23 16
333 126.21 wind 1.0 10 < th dose independent rect. 14 13
336 126.24 temperature 10.0 720 > th dose independent rect. 15 8
338 126.24 temperature 10.0 720 > th dose independent rect. 23 16
354 126.38 atmosphere 995.0 720 > th dose independent rect. 15 8
359 126.49 temperature 10.0 720 > th dose independent rect. 3 8
360 126.49 humidity 50.0 720 > th dose independent rect. 3 8
361 126.49 atmosphere 995.0 720 > th dose independent rect. 3 8
362 126.49 temperature 10.0 720 > th dose independent rect. 11 16
369 126.66 atmosphere 995.0 720 > th dose independent rect. 11 16
372 126.76 radiation 10.0 30 < th dose independent rect. 3 23
378 126.89 radiation 10.0 30 < th dose dependent rect. 3 23
382 126.93 precipitation 0.1 720 < th dose independent rect. 11 16
383 126.93 precipitation 0.1 720 < th dose dependent rect. 11 16
393 127.20 wind 9.0 720 < th dose independent rect. 3 8
407 127.48 temperature 10.0 720 > th dose dependent rect. 3 1
420 127.77 wind 1.0 10 < th dose independent rect. 8 19
426 127.87 wind 1.0 10 < th dose independent rect. 6 21
490 128.42 wind 1.0 720 > th dose independent rect. 15 8
493 128.43 humidity 50.0 720 > th dose independent rect. 8 7
496 128.47 humidity 90.0 10 > th dose independent rect. 24 3
499 128.50 radiation 20.0 720 > th dose independent rect. 16 1
544 128.62 wind 3.0 30 < th dose dependent rect. 13 14
558 128.68 humidity 50.0 720 > th dose independent rect. 17 8
563 128.69 atmosphere 995.0 30 > th dose dependent rect. 3 23
566 128.70 atmosphere 1015.0 14400 > th dose dependent rect. 19 2
567 128.73 wind 9.0 30 < th dose dependent rect. 3 23
587 128.83 wind 3.0 30 < th dose dependent rect. 15 12
600 128.90 temperature 20.0 90 > th dose dependent rect. 3 8
613 128.96 precipitation 0.1 720 < th dose independent rect. 3 8
614 128.96 precipitation 0.1 720 < th dose dependent rect. 3 8
629 129.04 atmosphere 1015.0 43200 > th dose dependent rect. 12 7
641 129.12 radiation 1.0 720 > th dose dependent rect. 15 1
644 129.13 atmosphere 1015.0 43200 > th dose dependent rect. 17 1
647 129.14 temperature 20.0 90 > th dose independent rect. 3 8
668 129.17 precipitation 0.1 720 < th dose independent rect. 23 16
672 129.17 precipitation 0.1 720 < th dose dependent rect. 23 16
776 129.36 atmosphere 1015.0 14400 > th dose independent rect. 14 4
834 129.54 wind 3.0 30 < th dose dependent rect. 2 6
842 129.57 atmosphere 1015.0 14400 < th dose independent rect. 15 5
881 129.67 temperature 25.0 10 > th dose independent rect. 24 11
882 129.67 atmosphere 1015.0 43200 > th dose dependent sin 18 NA
888 129.68 humidity 90.0 14400 < th dose independent rect. 24 1
893 129.70 atmosphere 1015.0 43200 < th dose independent rect. 18 2
927 129.79 atmosphere 1015.0 720 < th dose independent rect. 3 8
931 129.80 wind 1.0 30 > th dose independent rect. 3 23
936 129.81 wind 9.0 720 < th dose independent rect. 15 8
939 129.82 atmosphere 1015.0 43200 > th dose independent rect. 19 1
981 129.88 atmosphere 1005.0 10 > th dose independent rect. 4 7
983 129.88 temperature 20.0 90 > th dose independent rect. 3 10
991 129.90 radiation 40.0 90 < th dose independent rect. 13 14