Os06g0136000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Hypersensitive-induced reaction protein 4.
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Os06g0136000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Hypersensitive-induced reaction protein 4.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.57 | 0.264 | 10.6 | 0.0855 | 0.648 | 0.539 | 0.14 | -0.58 | 0.0276 | 22.5 | 20 | 10 | -- | -- |
| 32.01 | 0.264 | 10.6 | 0.0759 | 0.657 | 0.523 | -0.431 | -- | 0.0291 | 22.6 | 20 | 9 | -- | -- |
| 31.59 | 0.262 | 10.6 | 0.0833 | 0.646 | 0.539 | -- | -0.473 | 0.0275 | 22.5 | 20 | 9 | -- | -- |
| 32.79 | 0.267 | 10.6 | 0.0997 | 0.652 | 0.532 | -- | -- | 0.0264 | 22.5 | 20 | 9 | -- | -- |
| 38.63 | 0.289 | 10.6 | 0.0865 | -- | 0.976 | -- | -0.523 | 0.0347 | -- | 15.74 | 9 | -- | -- |
| 36.97 | 0.285 | 10.6 | 0.0702 | 1.18 | -- | -0.388 | -- | 0.0211 | 23.2 | -- | -- | -- | -- |
| 37.61 | 0.287 | 10.6 | 0.0861 | 1.18 | -- | -- | -- | 0.0225 | 23.2 | -- | -- | -- | -- |
| 40.17 | 0.295 | 10.5 | 0.104 | -- | 0.976 | -- | -- | 0.0383 | -- | 16.12 | 9 | -- | -- |
| 33.06 | 0.268 | 10.6 | -- | 0.66 | 0.524 | -- | -- | 0.0255 | 22.6 | 20 | 9 | -- | -- |
| 124.31 | 0.521 | 10.6 | 0.114 | -- | -- | -- | -- | 0.0328 | -- | -- | -- | -- | -- |
| 37.81 | 0.288 | 10.6 | -- | 1.18 | -- | -- | -- | 0.0129 | 23.2 | -- | -- | -- | -- |
| 40.44 | 0.296 | 10.6 | -- | -- | 0.965 | -- | -- | 0.0298 | -- | 14.02 | 9 | -- | -- |
| 124.65 | 0.521 | 10.6 | -- | -- | -- | -- | -- | 0.0201 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.72 | temperature | 30.0 | 270 | < th | dose independent | rect. | 6 | 6 |
| 2 | 24.84 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 1 | 16 |
| 3 | 24.86 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 24 | 18 |
| 5 | 24.99 | temperature | 30.0 | 270 | < th | dose independent | rect. | 19 | 16 |
| 8 | 25.04 | temperature | 15.0 | 270 | > th | dose independent | rect. | 1 | 16 |
| 11 | 25.45 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 24 | 7 |
| 16 | 25.68 | wind | 1.0 | 270 | > th | dose independent | rect. | 7 | 17 |
| 17 | 25.68 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 7 | 4 |
| 18 | 25.70 | temperature | 15.0 | 270 | > th | dose independent | rect. | 23 | 8 |
| 20 | 25.73 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 16 |
| 21 | 25.73 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 16 |
| 23 | 25.75 | wind | 1.0 | 270 | > th | dose independent | rect. | 17 | 8 |
| 24 | 25.75 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 11 | 8 |
| 26 | 25.77 | wind | 1.0 | 270 | > th | dose independent | rect. | 6 | 6 |
| 27 | 25.77 | radiation | 10.0 | 270 | < th | dose independent | rect. | 24 | 7 |
| 28 | 25.79 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 17 | 8 |
| 29 | 25.79 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 17 | 8 |
| 31 | 25.80 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 19 | 16 |
| 33 | 25.80 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 19 | 16 |
| 38 | 25.84 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 23 | 8 |
| 40 | 25.86 | humidity | 70.0 | 270 | > th | dose independent | rect. | 23 | 8 |
| 44 | 25.91 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 7 | 3 |
| 45 | 25.92 | temperature | 15.0 | 270 | > th | dose independent | rect. | 11 | 8 |
| 47 | 25.93 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 6 |
| 48 | 25.93 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 6 | 6 |
| 49 | 25.93 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 6 | 6 |
| 51 | 25.93 | temperature | 10.0 | 270 | > th | dose independent | rect. | 12 | 18 |
| 63 | 25.97 | temperature | 30.0 | 270 | < th | dose independent | rect. | 23 | 8 |
| 64 | 25.97 | humidity | 50.0 | 270 | > th | dose independent | rect. | 23 | 8 |
| 66 | 25.97 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 23 | 8 |
| 68 | 25.97 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 16 |
| 72 | 25.99 | wind | 9.0 | 270 | < th | dose independent | rect. | 23 | 8 |
| 73 | 25.99 | wind | 9.0 | 270 | < th | dose independent | rect. | 1 | 16 |
| 74 | 26.00 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 6 | 5 |
| 76 | 26.01 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 6 |
| 77 | 26.01 | wind | 9.0 | 270 | < th | dose independent | rect. | 17 | 8 |
| 79 | 26.01 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 6 |
| 80 | 26.01 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 23 | 8 |
| 89 | 26.06 | humidity | 50.0 | 270 | > th | dose independent | rect. | 6 | 6 |
| 94 | 26.10 | temperature | 10.0 | 270 | > th | dose independent | rect. | 17 | 8 |
| 95 | 26.10 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 23 | 8 |
| 96 | 26.10 | radiation | 20.0 | 270 | < th | dose independent | rect. | 17 | 8 |
| 100 | 26.10 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 1 | 16 |
| 101 | 26.11 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 1 | 8 |
| 109 | 26.18 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 17 | 8 |
| 110 | 26.18 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 17 | 8 |
| 128 | 26.23 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 6 |
| 130 | 26.23 | wind | 9.0 | 270 | < th | dose independent | rect. | 12 | 18 |
| 133 | 26.24 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 16 |
| 141 | 26.28 | humidity | 50.0 | 270 | > th | dose independent | rect. | 17 | 8 |
| 144 | 26.29 | temperature | 10.0 | 270 | > th | dose independent | rect. | 19 | 16 |
| 145 | 26.29 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 19 | 16 |
| 159 | 26.35 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 23 | 8 |
| 160 | 26.35 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 23 | 8 |
| 163 | 26.37 | humidity | 50.0 | 270 | > th | dose independent | rect. | 19 | 16 |
| 183 | 26.41 | wind | 9.0 | 270 | < th | dose independent | rect. | 19 | 16 |
| 189 | 26.42 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 16 |
| 190 | 26.42 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 16 |
| 195 | 26.44 | wind | 9.0 | 270 | < th | dose independent | rect. | 11 | 8 |
| 224 | 26.56 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 12 | 18 |
| 231 | 26.58 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 11 | 8 |
| 232 | 26.58 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 11 | 8 |
| 233 | 26.59 | wind | 1.0 | 270 | > th | dose independent | rect. | 11 | 8 |
| 238 | 26.60 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 16 |
| 240 | 26.61 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 12 | 18 |
| 241 | 26.61 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 12 | 18 |
| 246 | 26.63 | radiation | 40.0 | 270 | < th | dose independent | rect. | 19 | 16 |
| 261 | 26.68 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 9 | 16 |
| 262 | 26.68 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 9 | 16 |
| 285 | 26.74 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 17 |
| 321 | 26.82 | temperature | 10.0 | 90 | > th | dose independent | rect. | 9 | 16 |
| 341 | 26.87 | wind | 1.0 | 270 | > th | dose independent | rect. | 18 | 18 |
| 385 | 26.94 | wind | 1.0 | 270 | > th | dose independent | rect. | 7 | 4 |
| 391 | 26.95 | wind | 1.0 | 270 | > th | dose independent | rect. | 12 | 6 |
| 426 | 27.04 | wind | 1.0 | 270 | > th | dose independent | rect. | 19 | 16 |
| 445 | 27.07 | radiation | 40.0 | 270 | < th | dose independent | rect. | 6 | 6 |
| 449 | 27.08 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 12 | 18 |
| 481 | 27.15 | humidity | 70.0 | 270 | > th | dose independent | rect. | 7 | 4 |
| 497 | 27.17 | temperature | 30.0 | 270 | < th | dose independent | rect. | 17 | 8 |
| 521 | 27.20 | humidity | 50.0 | 270 | > th | dose independent | rect. | 12 | 18 |
| 523 | 27.21 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 9 | 16 |
| 542 | 27.22 | wind | 1.0 | 90 | > th | dose independent | rect. | 9 | 16 |
| 563 | 27.27 | wind | 9.0 | 90 | < th | dose independent | rect. | 9 | 16 |
| 565 | 27.28 | radiation | 40.0 | 270 | < th | dose independent | rect. | 7 | 4 |
| 575 | 27.30 | humidity | 50.0 | 270 | > th | dose independent | rect. | 1 | 16 |
| 589 | 27.36 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 16 |
| 595 | 27.37 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 11 | 8 |
| 629 | 27.43 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 4 |
| 635 | 27.43 | radiation | 40.0 | 270 | < th | dose independent | rect. | 12 | 17 |
| 658 | 27.47 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 4 |
| 664 | 27.47 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 4 |
| 669 | 27.47 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 12 | 18 |
| 701 | 27.52 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 4 |
| 742 | 27.55 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 11 | 20 |
| 747 | 27.56 | radiation | 40.0 | 270 | < th | dose independent | rect. | 7 | 17 |
| 753 | 27.57 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 6 | 18 |
| 771 | 27.63 | radiation | 1.0 | 270 | > th | dose independent | rect. | 4 | 8 |
| 789 | 27.64 | wind | 9.0 | 270 | < th | dose dependent | rect. | 17 | 7 |
| 848 | 27.73 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 3 | 15 |
| 871 | 27.76 | humidity | 50.0 | 270 | > th | dose independent | rect. | 12 | 7 |
| 920 | 27.80 | radiation | 10.0 | 10 | < th | dose dependent | sin | 1 | NA |
| 949 | 27.85 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 12 | 8 |