Os08g0398400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Hypersensitive-induced response protein.
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Os08g0398400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Hypersensitive-induced response protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.22 | 0.263 | 12.9 | 0.0408 | 0.609 | 0.8 | 0.129 | -1.94 | 0.248 | 3.28 | 30.2 | 823 | -- | -- |
| 31.42 | 0.261 | 12.9 | 0.261 | 0.638 | 0.603 | 0.169 | -- | 0.246 | 3.21 | 30.23 | 819 | -- | -- |
| 31.27 | 0.26 | 12.9 | 0.0326 | 0.604 | 0.793 | -- | -1.95 | 0.249 | 3.27 | 30.3 | 836 | -- | -- |
| 31.38 | 0.261 | 12.9 | 0.248 | 0.609 | 0.585 | -- | -- | 0.248 | 3.28 | 30.2 | 825 | -- | -- |
| 45.54 | 0.314 | 13 | 0.14 | -- | 0.726 | -- | -0.373 | 0.0599 | -- | 23.9 | 1156 | -- | -- |
| 40.29 | 0.298 | 12.9 | 0.349 | 0.587 | -- | 0.162 | -- | 0.178 | 2.47 | -- | -- | -- | -- |
| 40.38 | 0.298 | 12.9 | 0.344 | 0.588 | -- | -- | -- | 0.177 | 2.51 | -- | -- | -- | -- |
| 45.59 | 0.314 | 12.9 | 0.155 | -- | 0.662 | -- | -- | 0.0799 | -- | 23.62 | 1151 | -- | -- |
| 32.92 | 0.267 | 12.9 | -- | 0.61 | 0.606 | -- | -- | 0.23 | 3.25 | 30.1 | 846 | -- | -- |
| 60.7 | 0.364 | 12.9 | 0.369 | -- | -- | -- | -- | 0.192 | -- | -- | -- | -- | -- |
| 43.51 | 0.309 | 12.9 | -- | 0.595 | -- | -- | -- | 0.139 | 2.52 | -- | -- | -- | -- |
| 46.2 | 0.317 | 12.9 | -- | -- | 0.709 | -- | -- | 0.0563 | -- | 23.53 | 1152 | -- | -- |
| 64.3 | 0.374 | 12.9 | -- | -- | -- | -- | -- | 0.151 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.19 | temperature | 10 | 270 | > th | dose dependent | rect. | 15 | 16 |
| 5 | 29.72 | humidity | 70 | 270 | > th | dose independent | rect. | 17 | 10 |
| 14 | 30.13 | temperature | 10 | 270 | > th | dose dependent | rect. | 2 | 18 |
| 15 | 30.18 | radiation | 40 | 10 | < th | dose dependent | rect. | 4 | 16 |
| 17 | 30.22 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 16 |
| 22 | 30.33 | temperature | 30 | 270 | < th | dose independent | rect. | 17 | 10 |
| 31 | 30.51 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 3 |
| 37 | 30.59 | temperature | 15 | 10 | > th | dose dependent | rect. | 16 | 17 |
| 48 | 30.67 | radiation | 30 | 30 | < th | dose independent | rect. | 4 | 16 |
| 50 | 30.69 | temperature | 30 | 720 | < th | dose independent | rect. | 14 | 7 |
| 61 | 30.77 | temperature | 25 | 270 | > th | dose dependent | rect. | 15 | 5 |
| 79 | 30.86 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 20 |
| 88 | 30.90 | temperature | 30 | 720 | < th | dose independent | rect. | 14 | 14 |
| 92 | 30.92 | temperature | 30 | 720 | < th | dose independent | rect. | 14 | 22 |
| 107 | 30.97 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 17 |
| 116 | 31.00 | temperature | 30 | 720 | > th | dose dependent | sin | 14 | NA |
| 119 | 31.01 | temperature | 30 | 720 | < th | dose independent | sin | 11 | NA |
| 123 | 31.01 | temperature | 30 | 720 | > th | dose dependent | rect. | 14 | 21 |
| 124 | 31.02 | temperature | 30 | 270 | < th | dose independent | rect. | 9 | 16 |
| 127 | 31.02 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 12 |
| 133 | 31.02 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 19 |
| 135 | 31.03 | humidity | 50 | 270 | > th | dose independent | rect. | 5 | 23 |
| 141 | 31.04 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 8 |
| 143 | 31.05 | temperature | 30 | 270 | < th | dose independent | rect. | 8 | 18 |
| 147 | 31.05 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 16 |
| 152 | 31.06 | temperature | 30 | 720 | > th | dose dependent | sin | 11 | NA |
| 158 | 31.07 | temperature | 30 | 720 | > th | dose independent | rect. | 15 | 19 |
| 219 | 31.15 | temperature | 30 | 720 | > th | dose independent | sin | 11 | NA |
| 252 | 31.20 | humidity | 50 | 270 | > th | dose dependent | rect. | 17 | 9 |
| 320 | 31.26 | temperature | 10 | 30 | > th | dose dependent | rect. | 4 | 16 |
| 326 | 31.27 | humidity | 50 | 270 | > th | dose independent | rect. | 9 | 16 |
| 450 | 31.44 | temperature | 30 | 720 | > th | dose independent | rect. | 15 | 4 |
| 539 | 31.49 | temperature | 30 | 720 | > th | dose dependent | no | NA | NA |
| 650 | 31.50 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 683 | 31.54 | humidity | 80 | 270 | < th | dose dependent | rect. | 16 | 5 |
| 691 | 31.55 | humidity | 50 | 270 | > th | dose independent | rect. | 7 | 19 |
| 714 | 31.60 | radiation | 10 | 90 | > th | dose independent | rect. | 9 | 7 |
| 819 | 31.70 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 835 | 31.71 | radiation | 1 | 270 | < th | dose dependent | rect. | 17 | 10 |
| 850 | 31.72 | wind | 7 | 43200 | > th | dose dependent | rect. | 9 | 12 |
| 856 | 31.73 | radiation | 1 | 270 | < th | dose independent | rect. | 17 | 10 |
| 883 | 31.75 | wind | 7 | 43200 | > th | dose dependent | sin | 21 | NA |
| 910 | 31.77 | wind | 7 | 43200 | > th | dose dependent | rect. | 5 | 16 |
| 964 | 31.80 | wind | 7 | 43200 | > th | dose dependent | rect. | 9 | 10 |
| 974 | 31.81 | temperature | 30 | 720 | < th | dose independent | rect. | 5 | 16 |