BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0398400 Os08g0398400|AK065554
(284 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G62740.1 | chr5:25201320-25202535 FORWARD LENGTH=287 513 e-146
AT1G69840.1 | chr1:26293932-26295150 REVERSE LENGTH=287 489 e-139
AT3G01290.1 | chr3:88252-89356 REVERSE LENGTH=286 458 e-129
AT5G51570.1 | chr5:20949511-20951234 FORWARD LENGTH=293 351 3e-97
AT5G54100.1 | chr5:21954035-21956500 REVERSE LENGTH=402 62 5e-10
AT4G27585.1 | chr4:13766984-13769832 REVERSE LENGTH=412 54 7e-08
>AT5G62740.1 | chr5:25201320-25202535 FORWARD LENGTH=287
Length = 286
Score = 513 bits (1321), Expect = e-146, Method: Compositional matrix adjust.
Identities = 243/281 (86%), Positives = 266/281 (94%)
Query: 1 MGQALGLVQVDQSTVAIKESFGKFDEVLEPGCHFLPWCIGKQIAGYLSLRVQQLDVRCET 60
MG VQVDQSTVAIKE+FGKF++VLEPGCHFLPWC+G Q+AGYLSLRVQQLDVRCET
Sbjct: 1 MGNLFCCVQVDQSTVAIKETFGKFEDVLEPGCHFLPWCLGSQVAGYLSLRVQQLDVRCET 60
Query: 61 KTKDNVFVNVVASVQYRALAEKASDAFYRLSNTREQIQSYVFDVIRASVPKMNLDDAFEQ 120
KTKDNVFVNVVAS+QYRALA KA+DA+Y+LSNTR QIQ+YVFDVIRASVPK+ LDD FEQ
Sbjct: 61 KTKDNVFVNVVASIQYRALANKANDAYYKLSNTRGQIQAYVFDVIRASVPKLLLDDVFEQ 120
Query: 121 KNEIAKAVEDELEKAMSMYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRVAANEKAEA 180
KN+IAKAVE+ELEKAMS YGYEIVQTLIVDIEPDEHVKRAMNEINAAAR+R+AANEKAEA
Sbjct: 121 KNDIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNEINAAARMRLAANEKAEA 180
Query: 181 EKILQIKRAEGDAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSAKDVMDMVLVT 240
EKILQIKRAEG+AESKYL+GLGIARQRQAIVDGLRDSVL F+ NVPGT+AKDVMDMVLVT
Sbjct: 181 EKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFAVNVPGTTAKDVMDMVLVT 240
Query: 241 QYFDTMKEIGASSKSSSVFIPHGPGAVKDIAAQIRDGQLQA 281
QYFDTMKEIGASSKSS+VFIPHGPGAV+D+A+QIRDG LQ
Sbjct: 241 QYFDTMKEIGASSKSSAVFIPHGPGAVRDVASQIRDGLLQG 281
>AT1G69840.1 | chr1:26293932-26295150 REVERSE LENGTH=287
Length = 286
Score = 489 bits (1259), Expect = e-139, Method: Compositional matrix adjust.
Identities = 240/281 (85%), Positives = 264/281 (93%)
Query: 1 MGQALGLVQVDQSTVAIKESFGKFDEVLEPGCHFLPWCIGKQIAGYLSLRVQQLDVRCET 60
MGQALG +QVDQS VAIKE+FGKFDEVLEPGCH LPWC+G Q+AG+LSLRVQQLDVRCET
Sbjct: 1 MGQALGCIQVDQSNVAIKETFGKFDEVLEPGCHCLPWCLGSQVAGHLSLRVQQLDVRCET 60
Query: 61 KTKDNVFVNVVASVQYRALAEKASDAFYRLSNTREQIQSYVFDVIRASVPKMNLDDAFEQ 120
KTKDNVFV VVAS+QYRALAE A DAFY+LSNTR QIQ+YVFDVIRASVPK++LD FEQ
Sbjct: 61 KTKDNVFVTVVASIQYRALAESAQDAFYKLSNTRNQIQAYVFDVIRASVPKLDLDSTFEQ 120
Query: 121 KNEIAKAVEDELEKAMSMYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRVAANEKAEA 180
KN+IAK VE ELEKAMS YGYEIVQTLIVDIEPD HVKRAMNEINAA+R+R AA+EKAEA
Sbjct: 121 KNDIAKTVETELEKAMSHYGYEIVQTLIVDIEPDVHVKRAMNEINAASRMREAASEKAEA 180
Query: 181 EKILQIKRAEGDAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSAKDVMDMVLVT 240
EKILQIKRAEG+AESKYL+G+GIARQRQAIVDGLR+SVLAFSE+VPGTS+KDVMDMVLVT
Sbjct: 181 EKILQIKRAEGEAESKYLSGMGIARQRQAIVDGLRNSVLAFSESVPGTSSKDVMDMVLVT 240
Query: 241 QYFDTMKEIGASSKSSSVFIPHGPGAVKDIAAQIRDGQLQA 281
QYFDT+KEIGASSKS+SVFIPHGPGAV+DIA+QIRDG LQ
Sbjct: 241 QYFDTLKEIGASSKSNSVFIPHGPGAVRDIASQIRDGLLQG 281
>AT3G01290.1 | chr3:88252-89356 REVERSE LENGTH=286
Length = 285
Score = 458 bits (1179), Expect = e-129, Method: Compositional matrix adjust.
Identities = 217/281 (77%), Positives = 251/281 (89%)
Query: 1 MGQALGLVQVDQSTVAIKESFGKFDEVLEPGCHFLPWCIGKQIAGYLSLRVQQLDVRCET 60
MG V V QS VA+KE FGKF +VL PG F+PW IG +AG L+LR+QQLDV+CET
Sbjct: 1 MGNLFCCVLVKQSDVAVKERFGKFQKVLNPGLQFVPWVIGDYVAGTLTLRLQQLDVQCET 60
Query: 61 KTKDNVFVNVVASVQYRALAEKASDAFYRLSNTREQIQSYVFDVIRASVPKMNLDDAFEQ 120
KTKDNVFV VVAS+QYR LA+KASDAFYRLSN QI++YVFDVIRA VPK+NLDD FEQ
Sbjct: 61 KTKDNVFVTVVASIQYRVLADKASDAFYRLSNPTTQIKAYVFDVIRACVPKLNLDDVFEQ 120
Query: 121 KNEIAKAVEDELEKAMSMYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRVAANEKAEA 180
KNEIAK+VE+EL+KAM+ YGYEI+QTLI+DIEPD+ VKRAMNEINAAAR+RVAA+EKAEA
Sbjct: 121 KNEIAKSVEEELDKAMTAYGYEILQTLIIDIEPDQQVKRAMNEINAAARMRVAASEKAEA 180
Query: 181 EKILQIKRAEGDAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSAKDVMDMVLVT 240
EKI+QIKRAEG+AESKYL+GLGIARQRQAIVDGLRDSVL F+ NVPGTSAKDV+DMV++T
Sbjct: 181 EKIIQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFAGNVPGTSAKDVLDMVMMT 240
Query: 241 QYFDTMKEIGASSKSSSVFIPHGPGAVKDIAAQIRDGQLQA 281
QYFDTM++IGA+SKSS+VFIPHGPGAV D+AAQIR+G LQA
Sbjct: 241 QYFDTMRDIGATSKSSAVFIPHGPGAVSDVAAQIRNGLLQA 281
>AT5G51570.1 | chr5:20949511-20951234 FORWARD LENGTH=293
Length = 292
Score = 351 bits (900), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 160/272 (58%), Positives = 216/272 (79%)
Query: 10 VDQSTVAIKESFGKFDEVLEPGCHFLPWCIGKQIAGYLSLRVQQLDVRCETKTKDNVFVN 69
++Q++V + E +G+F+ + EPGCHF G+ +AG LS R++ LDV+ ETKTKDNVFV
Sbjct: 12 IEQASVGVVERWGRFEHIAEPGCHFFNPLAGQWLAGVLSTRIKSLDVKIETKTKDNVFVQ 71
Query: 70 VVASVQYRALAEKASDAFYRLSNTREQIQSYVFDVIRASVPKMNLDDAFEQKNEIAKAVE 129
+V S+QYR + A DAFY L N +EQIQ+YVFDV+RA VP M LD FEQK E+AK+V
Sbjct: 72 LVCSIQYRVVKASADDAFYELQNPKEQIQAYVFDVVRALVPMMTLDALFEQKGEVAKSVL 131
Query: 130 DELEKAMSMYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRVAANEKAEAEKILQIKRA 189
+ELEK M YGY I L+VDI PD V++AMNEINAA RL++A+ K EAEKILQ+KRA
Sbjct: 132 EELEKVMGAYGYSIEHILMVDIIPDPSVRKAMNEINAAQRLQLASVYKGEAEKILQVKRA 191
Query: 190 EGDAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSAKDVMDMVLVTQYFDTMKEI 249
E +AE+KYL G+G+ARQRQAI DGLR+++L FS+ V GTSAK+VMD++++TQYFDT++++
Sbjct: 192 EAEAEAKYLGGVGVARQRQAITDGLRENILNFSDKVEGTSAKEVMDLIMITQYFDTIRDL 251
Query: 250 GASSKSSSVFIPHGPGAVKDIAAQIRDGQLQA 281
G SSK+++VF+PHGPG V+DI+ QIR+G ++A
Sbjct: 252 GNSSKNTTVFLPHGPGHVRDISDQIRNGMMEA 283
>AT5G54100.1 | chr5:21954035-21956500 REVERSE LENGTH=402
Length = 401
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 93/195 (47%), Gaps = 6/195 (3%)
Query: 6 GLVQVDQSTVAIKESFGKFDEVLEPGCHFL-PWCIGKQIAGYLSLRVQQLDVRCETK-TK 63
G+ V + + E FGKF L G HFL P+ +IA SL+ + + + +T TK
Sbjct: 105 GIRIVPERKACVIERFGKFHTTLPAGIHFLVPFV--DRIAYVHSLKEEAIPIGNQTAITK 162
Query: 64 DNVFVNVVASVQYRALAEKASDAFYRLSNTREQIQSYVFDVIRASVPKMNLDDAFEQKNE 123
DNV +++ + + + K A Y + N + +R+ + K+ LD FE+++
Sbjct: 163 DNVSIHIDGVLYVKIVDPKL--ASYGVENPIYAVMQLAQTTMRSELGKITLDKTFEERDT 220
Query: 124 IAKAVEDELEKAMSMYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRVAANEKAEAEKI 183
+ + + + + A +G + ++ I DI P V+ AM A R + A ++E E+
Sbjct: 221 LNEKIVEAINVAAKDWGLQCLRYEIRDIMPPNGVRVAMEMQAEAERKKRAQILESEGERQ 280
Query: 184 LQIKRAEGDAESKYL 198
I RA+G S L
Sbjct: 281 AHINRADGKKSSVIL 295
>AT4G27585.1 | chr4:13766984-13769832 REVERSE LENGTH=412
Length = 411
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 68/293 (23%), Positives = 129/293 (44%), Gaps = 43/293 (14%)
Query: 6 GLVQVDQSTVAIKESFGKFDEVLEPGCHFL-PWCIGKQIAGYLSLRVQQLDVRCETK-TK 63
G+ V + + E FGK+ L G HFL P+ +IA SL+ + + + +T TK
Sbjct: 62 GIRIVPERKAFVIERFGKYATTLPSGIHFLIPFV--DRIAYVHSLKEEAIPIPNQTAITK 119
Query: 64 DNVFVNVVASVQYRALAEKASDAFYRLSNTREQIQSYVFDVIRASVPKMNLDDAFEQKNE 123
DNV +++ + + + K A Y + + + +R+ + K+ LD FE+++
Sbjct: 120 DNVSIHIDGVLYVKIVDPKL--ASYGVESPIYAVVQLAQTTMRSELGKITLDKTFEERDT 177
Query: 124 IAKAVEDELEKAMSMYGYEIVQTLIVDIEPDEHVKRAMNEINAAA--------------- 168
+ + + + + A +G + ++ I DI P V+ AM E+ A A
Sbjct: 178 LNEKIVEAINVAAKDWGLQCLRYEIRDIMPPHGVRAAM-EMQAEAERKKRAQILESEGER 236
Query: 169 --RLRVAANEK------AEAEKILQIKRAEGDAESKYLAGLGIARQRQAIVDGLRDSVLA 220
+ +A +K +EA K+ Q+ RA+G+AE+ I + QA GL +
Sbjct: 237 QSHINIADGKKSSVILASEAAKMDQVNRAQGEAEA-------ILARAQATAKGL----VL 285
Query: 221 FSENVPGTSAKDVMDMVLVTQYFDTMKEIGASSKSSSVFIPHGPGAVKDIAAQ 273
S+++ T + + + QY I + + + + +P G + AQ
Sbjct: 286 LSQSLKETGGVEAASLRVAEQYITAFGNI--AKEGTIMLLPSGASNPASMIAQ 336
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.132 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,127,348
Number of extensions: 187427
Number of successful extensions: 689
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 690
Number of HSP's successfully gapped: 7
Length of query: 284
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 187
Effective length of database: 8,447,217
Effective search space: 1579629579
Effective search space used: 1579629579
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)