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Os05g0591900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Hypersensitive-induced response protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.8 (0.0261) R2 : 0.884
β1 : -- (--) R2dD : -- R2D : --
β2 : 3.32 (0.0741) R2dC : 0.66 R2C : 0.828
β3 : -1.62 (0.126) R2dE : 0.0616 R2E : 0.221
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.335 (0.058) R2dN8 : 0.013 R2N8 : -0.0151
σ : 0.475
deviance : 104.07
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C
peak time of C : 19.4
E
wheather : temperature
threshold : 22.82
memory length : 2
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 1.98
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
85.43 0.434 12.8 1.11 3.31 -1.87 1.85 3.37 0.59 19.4 22.86 4 2.29 --
90.4 0.446 12.8 0.621 3.3 -1.72 1.37 -- 0.425 19.4 22.63 6 2.14 --
93.71 0.454 12.8 0.884 3.33 -1.83 -- 2.13 0.526 19.4 22.89 2 2.24 --
95.26 0.455 12.8 0.592 3.25 -1.77 -- -- 0.426 19.4 22.6 2 1.91 --
115.05 0.5 12.8 0.595 -- -4.22 -- -1.07 0.255 -- 1.992 80 0.00011 --
133.1 0.541 12.9 0.373 3.77 -- 1.39 -- 0.077 19.3 -- -- -- --
138.35 0.551 12.9 0.343 3.78 -- -- -- 0.0799 19.3 -- -- -- --
116.04 0.502 12.7 0.636 -- -4.26 -- -- 0.326 -- 0.6323 96 0.000625 --
104.07 0.475 12.8 -- 3.32 -1.62 -- -- 0.335 19.4 22.82 2 1.98 --
895.39 1.4 12.8 0.278 -- -- -- -- 0.0166 -- -- -- -- --
141.45 0.556 12.9 -- 3.77 -- -- -- 0.0417 19.3 -- -- -- --
126.63 0.524 12.8 -- -- -4.24 -- -- 0.262 -- -0.2107 102 9.29e-08 --
897.44 1.4 12.8 -- -- -- -- -- -0.0142 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 91.51 temperature 20.0 90 > th dose dependent rect. 20 15
3 92.28 temperature 20.0 10 > th dose dependent rect. 20 15
4 92.35 temperature 15.0 10 > th dose dependent rect. 4 8
5 92.80 temperature 20.0 90 > th dose dependent rect. 4 7
10 94.13 temperature 20.0 10 > th dose dependent sin 7 NA
23 96.57 radiation 1.0 270 < th dose independent rect. 21 17
27 97.06 temperature 10.0 270 > th dose dependent rect. 17 16
43 98.30 temperature 25.0 30 > th dose independent rect. 20 15
44 98.31 radiation 1.0 270 < th dose dependent rect. 21 18
61 99.35 temperature 20.0 10 > th dose dependent rect. 17 19
80 99.82 humidity 50.0 90 > th dose dependent rect. 23 16
97 100.25 temperature 20.0 10 > th dose dependent rect. 24 12
99 100.32 humidity 60.0 10 > th dose dependent rect. 23 18
108 100.48 temperature 20.0 90 > th dose dependent rect. 24 11
128 100.85 temperature 30.0 10 < th dose dependent sin 7 NA
142 101.28 radiation 20.0 90 < th dose dependent rect. 23 16
155 101.66 radiation 1.0 270 > th dose independent rect. 17 16
165 101.86 radiation 1.0 270 > th dose independent sin 10 NA
173 102.00 temperature 20.0 30 > th dose independent rect. 4 8
196 102.40 radiation 1.0 270 < th dose independent sin 10 NA
212 102.63 temperature 30.0 90 < th dose dependent rect. 23 8
214 102.65 temperature 25.0 10 > th dose independent rect. 17 19
240 103.12 radiation 1.0 270 > th dose independent rect. 5 4
288 103.78 radiation 1.0 270 < th dose dependent sin 10 NA
324 104.36 precipitation 0.1 270 < th dose independent rect. 17 16
326 104.36 precipitation 0.1 270 < th dose dependent rect. 17 16
341 104.59 radiation 20.0 90 < th dose dependent rect. 23 12
343 104.62 radiation 20.0 10 < th dose dependent sin 8 NA
376 104.97 radiation 30.0 90 < th dose dependent sin 9 NA
417 105.40 temperature 30.0 10 < th dose dependent rect. 23 9
447 105.72 wind 1.0 270 > th dose independent rect. 23 16
450 105.75 radiation 1.0 90 > th dose dependent sin 10 NA
481 105.97 wind 9.0 270 < th dose dependent rect. 4 6
499 106.21 humidity 90.0 90 < th dose dependent rect. 6 5
526 106.32 radiation 20.0 90 < th dose dependent rect. 23 10
527 106.33 temperature 25.0 30 > th dose independent sin 8 NA
538 106.42 humidity 70.0 10 > th dose dependent rect. 23 13
542 106.45 humidity 90.0 270 < th dose independent rect. 6 3
544 106.46 humidity 80.0 30 > th dose independent rect. 23 17
556 106.51 humidity 50.0 270 > th dose dependent rect. 11 2
558 106.53 humidity 80.0 10 < th dose independent rect. 7 5
567 106.58 humidity 90.0 90 < th dose independent rect. 6 5
589 106.76 temperature 30.0 90 < th dose dependent rect. 23 12
605 106.90 humidity 90.0 90 < th dose dependent rect. 19 16
608 106.94 radiation 20.0 10 < th dose dependent rect. 23 9
651 107.19 radiation 20.0 10 < th dose dependent rect. 23 11
653 107.21 temperature 25.0 10 > th dose independent rect. 24 12
672 107.29 wind 1.0 270 > th dose independent rect. 9 8
678 107.32 precipitation 0.1 270 < th dose independent rect. 3 7
679 107.32 temperature 10.0 270 > th dose independent rect. 9 8
680 107.32 atmosphere 1015.0 270 < th dose independent rect. 9 8
681 107.32 temperature 10.0 270 > th dose independent rect. 17 16
682 107.32 precipitation 0.1 270 < th dose dependent rect. 3 7
696 107.40 wind 9.0 270 < th dose independent rect. 9 8
707 107.46 wind 9.0 270 < th dose independent rect. 17 16
709 107.48 temperature 25.0 90 > th dose independent rect. 24 11
733 107.62 atmosphere 995.0 270 > th dose independent rect. 9 8
737 107.62 humidity 50.0 10 > th dose dependent rect. 1 16
742 107.66 wind 9.0 10 < th dose independent rect. 4 8
765 107.77 humidity 50.0 90 > th dose dependent rect. 11 6
781 107.85 humidity 90.0 270 < th dose independent rect. 7 1
788 107.88 precipitation 0.1 270 < th dose independent rect. 9 8
789 107.88 precipitation 0.1 270 < th dose dependent rect. 9 8
791 107.89 precipitation 0.1 10 < th dose independent rect. 4 8
792 107.89 precipitation 0.1 10 < th dose dependent rect. 4 8
801 107.95 humidity 50.0 270 > th dose independent rect. 10 6
819 108.05 atmosphere 995.0 270 > th dose independent rect. 23 16
844 108.18 humidity 50.0 270 > th dose independent rect. 17 16
886 108.38 humidity 50.0 270 > th dose independent rect. 22 17
900 108.43 wind 1.0 270 > th dose independent rect. 15 8
902 108.43 wind 9.0 10 < th dose independent rect. 12 16
905 108.43 temperature 30.0 90 < th dose dependent rect. 23 17
906 108.43 radiation 1.0 90 > th dose dependent rect. 17 18
908 108.45 temperature 15.0 270 > th dose independent rect. 15 8
911 108.46 temperature 10.0 10 > th dose independent rect. 4 8
913 108.46 atmosphere 995.0 10 > th dose independent rect. 4 8
914 108.46 atmosphere 1015.0 10 < th dose independent rect. 4 8
915 108.46 temperature 10.0 10 > th dose independent rect. 12 16
933 108.51 temperature 10.0 270 > th dose independent rect. 23 16
942 108.54 atmosphere 995.0 270 > th dose independent rect. 17 16
977 108.62 humidity 90.0 10 < th dose dependent rect. 6 6
992 108.66 radiation 40.0 270 < th dose independent rect. 15 8