Os06g0135000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to PPLZ12 protein.
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Os06g0135000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to PPLZ12 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 56.26 | 0.352 | 11.9 | -1.71 | 0.79 | -1.66 | 0.352 | 0.187 | 0.129 | 2.85 | 24.89 | 117 | -- | -- |
| 56.3 | 0.349 | 11.9 | -1.69 | 0.786 | -1.68 | 0.408 | -- | 0.139 | 2.85 | 24.8 | 120 | -- | -- |
| 56.59 | 0.35 | 11.9 | -1.76 | 0.787 | -1.64 | -- | 0.426 | 0.123 | 2.87 | 24.86 | 121 | -- | -- |
| 56.85 | 0.351 | 11.9 | -1.7 | 0.781 | -1.69 | -- | -- | 0.14 | 2.83 | 24.71 | 120 | -- | -- |
| 71.34 | 0.393 | 12 | -1.87 | -- | -1.64 | -- | 0.615 | 0.0699 | -- | 25.51 | 1234 | -- | -- |
| 96.47 | 0.46 | 11.9 | -1.28 | 0.512 | -- | 0.449 | -- | 0.455 | 3.21 | -- | -- | -- | -- |
| 97.12 | 0.461 | 11.9 | -1.29 | 0.514 | -- | -- | -- | 0.452 | 3.19 | -- | -- | -- | -- |
| 71.44 | 0.394 | 11.9 | -1.89 | -- | -1.48 | -- | -- | 0.0831 | -- | 24.75 | 2504 | -- | -- |
| 124.46 | 0.522 | 11.9 | -- | 0.653 | -1 | -- | -- | 0.437 | 2.63 | 24.66 | 120 | -- | -- |
| 112.1 | 0.495 | 11.9 | -1.26 | -- | -- | -- | -- | 0.466 | -- | -- | -- | -- | -- |
| 140.69 | 0.555 | 11.8 | -- | 0.488 | -- | -- | -- | 0.596 | 3.19 | -- | -- | -- | -- |
| 142.22 | 0.555 | 11.9 | -- | -- | -0.84 | -- | -- | 0.447 | -- | 25.7 | 1119 | -- | -- |
| 154.25 | 0.58 | 11.8 | -- | -- | -- | -- | -- | 0.606 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 56.25 | temperature | 25 | 270 | < th | dose dependent | rect. | 8 | 22 |
| 3 | 56.32 | temperature | 25 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 6 | 56.38 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 11 | 56.53 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 14 | 56.92 | temperature | 25 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 19 | 56.97 | temperature | 25 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 25 | 57.01 | temperature | 25 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 31 | 57.05 | temperature | 25 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 40 | 57.14 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 52 | 57.53 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 120 | 58.85 | temperature | 25 | 1440 | < th | dose dependent | rect. | 15 | 11 |
| 121 | 58.86 | temperature | 25 | 1440 | < th | dose dependent | sin | 16 | NA |
| 122 | 58.86 | temperature | 25 | 1440 | < th | dose dependent | rect. | 16 | 9 |
| 133 | 58.96 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 6 |
| 135 | 58.97 | temperature | 25 | 1440 | < th | dose dependent | rect. | 10 | 19 |
| 185 | 59.19 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 19 |
| 214 | 59.33 | temperature | 25 | 1440 | < th | dose dependent | rect. | 14 | 22 |
| 248 | 59.50 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 253 | 59.51 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 23 |
| 254 | 59.51 | temperature | 25 | 1440 | < th | dose dependent | rect. | 5 | 23 |
| 260 | 59.52 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 23 |
| 294 | 59.61 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 599 | 61.33 | temperature | 20 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 675 | 61.77 | temperature | 10 | 1440 | > th | dose dependent | rect. | 19 | 11 |
| 680 | 61.78 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 6 |
| 986 | 62.32 | temperature | 10 | 1440 | > th | dose dependent | sin | 11 | NA |