BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0135000 Os06g0135000|AK067979
(61 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G51570.1 | chr5:20949511-20951234 FORWARD LENGTH=293 103 2e-23
AT5G62740.1 | chr5:25201320-25202535 FORWARD LENGTH=287 84 1e-17
AT1G69840.1 | chr1:26293932-26295150 REVERSE LENGTH=287 81 1e-16
AT3G01290.1 | chr3:88252-89356 REVERSE LENGTH=286 75 6e-15
>AT5G51570.1 | chr5:20949511-20951234 FORWARD LENGTH=293
Length = 292
Score = 103 bits (258), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 44/59 (74%), Positives = 56/59 (94%)
Query: 1 DSTTAKEVMDLIMVTQYFDTIKELGDGSKNTTVFIPQGPGHVKDISEQIRNGMMEASSN 59
+ T+AKEVMDLIM+TQYFDTI++LG+ SKNTTVF+P GPGHV+DIS+QIRNGMMEA+++
Sbjct: 228 EGTSAKEVMDLIMITQYFDTIRDLGNSSKNTTVFLPHGPGHVRDISDQIRNGMMEAAAS 286
>AT5G62740.1 | chr5:25201320-25202535 FORWARD LENGTH=287
Length = 286
Score = 84.0 bits (206), Expect = 1e-17, Method: Composition-based stats.
Identities = 35/59 (59%), Positives = 51/59 (86%)
Query: 3 TTAKEVMDLIMVTQYFDTIKELGDGSKNTTVFIPQGPGHVKDISEQIRNGMMEASSNNV 61
TTAK+VMD+++VTQYFDT+KE+G SK++ VFIP GPG V+D++ QIR+G+++ SS N+
Sbjct: 228 TTAKDVMDMVLVTQYFDTMKEIGASSKSSAVFIPHGPGAVRDVASQIRDGLLQGSSANL 286
>AT1G69840.1 | chr1:26293932-26295150 REVERSE LENGTH=287
Length = 286
Score = 80.9 bits (198), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 49/56 (87%)
Query: 3 TTAKEVMDLIMVTQYFDTIKELGDGSKNTTVFIPQGPGHVKDISEQIRNGMMEASS 58
T++K+VMD+++VTQYFDT+KE+G SK+ +VFIP GPG V+DI+ QIR+G+++ +S
Sbjct: 228 TSSKDVMDMVLVTQYFDTLKEIGASSKSNSVFIPHGPGAVRDIASQIRDGLLQGNS 283
>AT3G01290.1 | chr3:88252-89356 REVERSE LENGTH=286
Length = 285
Score = 75.1 bits (183), Expect = 6e-15, Method: Composition-based stats.
Identities = 30/56 (53%), Positives = 49/56 (87%)
Query: 3 TTAKEVMDLIMVTQYFDTIKELGDGSKNTTVFIPQGPGHVKDISEQIRNGMMEASS 58
T+AK+V+D++M+TQYFDT++++G SK++ VFIP GPG V D++ QIRNG+++A++
Sbjct: 228 TSAKDVLDMVMMTQYFDTMRDIGATSKSSAVFIPHGPGAVSDVAAQIRNGLLQANN 283
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.311 0.128 0.349
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,223,037
Number of extensions: 37131
Number of successful extensions: 78
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 4
Length of query: 61
Length of database: 11,106,569
Length adjustment: 34
Effective length of query: 27
Effective length of database: 10,174,425
Effective search space: 274709475
Effective search space used: 274709475
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 104 (44.7 bits)