BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0126500 Os06g0126500|AK065197
(339 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0126500 Ubiquitin domain containing protein 428 e-120
Os09g0524800 Ubiquitin domain containing protein 243 1e-64
Os08g0546100 Ubiquitin domain containing protein 239 2e-63
Os04g0619900 Ubiquitin domain containing protein 151 7e-37
Os01g0831200 Ubiquitin domain containing protein 120 2e-27
Os01g0907200 Ubiquitin domain containing protein 87 2e-17
AK058550 87 2e-17
Os02g0597700 Ubiquitin domain containing protein 86 3e-17
>Os06g0126500 Ubiquitin domain containing protein
Length = 339
Score = 428 bits (1100), Expect = e-120, Method: Compositional matrix adjust.
Identities = 233/339 (68%), Positives = 233/339 (68%)
Query: 1 MLGASPKAKKGATVKFGSMKNXXXXXXXXXXXXXXXXXXXXXXXXEEVWEVRPGGMLVQK 60
MLGASPKAKKGATVKFGSMKN EEVWEVRPGGMLVQK
Sbjct: 1 MLGASPKAKKGATVKFGSMKNPPPPPVVGAAAGAAAAAAGGKVPAEEVWEVRPGGMLVQK 60
Query: 61 RGGGADEEPVNVKPVPTIRVKVKHAGITHEIYINSQASFGELKKMVAARTGLHPDDQKVM 120
RGGGADEEPVNVKPVPTIRVKVKHAGITHEIYINSQASFGELKKMVAARTGLHPDDQKVM
Sbjct: 61 RGGGADEEPVNVKPVPTIRVKVKHAGITHEIYINSQASFGELKKMVAARTGLHPDDQKVM 120
Query: 121 YKDKERDSKAFLDMAGVKDRSKLVVVEDPXXXXXXXXXXXXNGHLXXXXXXXXXXXXXXD 180
YKDKERDSKAFLDMAGVKDRSKLVVVEDP NGHL D
Sbjct: 121 YKDKERDSKAFLDMAGVKDRSKLVVVEDPEARARRLIEERRNGHLEKAAKAVAAVTAEVD 180
Query: 181 KLAPKVAALDASVRKGEKVAENDVVQVTELLMNELLKLDAVVADGDVKAQRRLQVKRVQK 240
KLAPKVAALDASVRKGEKVAENDVVQVTELLMNELLKLDAVVADGDVKAQRRLQVKRVQK
Sbjct: 181 KLAPKVAALDASVRKGEKVAENDVVQVTELLMNELLKLDAVVADGDVKAQRRLQVKRVQK 240
Query: 241 YVETLDAVMAKNAAIVRKSGEKLTSKXXXXXXXXXXXXXXXXXXXXXXXGQTRWEMFDXX 300
YVETLDAVMAKNAAIVRKSGEKLTSK GQTRWEMFD
Sbjct: 241 YVETLDAVMAKNAAIVRKSGEKLTSKQHHHPPARQQQQQAHQHHQQPAAGQTRWEMFDLL 300
Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRLDWMLF 339
NRLDWMLF
Sbjct: 301 SSLPSTSSASSTTTVSSTASSGAPPPLPPPANRLDWMLF 339
>Os09g0524800 Ubiquitin domain containing protein
Length = 334
Score = 243 bits (621), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 128/209 (61%), Positives = 149/209 (71%), Gaps = 3/209 (1%)
Query: 46 EEVWEVRPGGMLVQKRGGGADEEPVNVKPVPTIRVKVKHAGITHEIYINSQASFGELKKM 105
E+ WEVRPGGMLVQKR D PVPTIRVKVK G+ HEIYINSQASFGELKK
Sbjct: 35 EDEWEVRPGGMLVQKRSPDGD---APAAPVPTIRVKVKFNGVYHEIYINSQASFGELKKQ 91
Query: 106 VAARTGLHPDDQKVMYKDKERDSKAFLDMAGVKDRSKLVVVEDPXXXXXXXXXXXXNGHL 165
++A TGLHP+DQK++YKDKERDSKAFLDMAGVKDRSK+V++EDP
Sbjct: 92 LSAPTGLHPEDQKIVYKDKERDSKAFLDMAGVKDRSKMVLLEDPTAQAKRLLEQRRTDKA 151
Query: 166 XXXXXXXXXXXXXXDKLAPKVAALDASVRKGEKVAENDVVQVTELLMNELLKLDAVVADG 225
DKLA KV AL+A V KG +V + DVV +TE LMNEL+KLDA+ A+G
Sbjct: 152 ERAAKSISRISLDVDKLATKVTALEAIVGKGGRVVDADVVTLTEALMNELVKLDAIAAEG 211
Query: 226 DVKAQRRLQVKRVQKYVETLDAVMAKNAA 254
+VK QRR+Q KRVQKYVE+LDA+ AKNAA
Sbjct: 212 EVKVQRRMQEKRVQKYVESLDAIRAKNAA 240
>Os08g0546100 Ubiquitin domain containing protein
Length = 501
Score = 239 bits (611), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 123/201 (61%), Positives = 148/201 (73%), Gaps = 1/201 (0%)
Query: 46 EEVWEVRPGGMLVQKRGGGADEEPVNVKPVPTIRVKVKHAGITHEIYINSQASFGELKKM 105
EEVWEVRPGGMLVQKR + E P PVPTIRVKVK+ G+ HEIYINSQASFGELKK+
Sbjct: 207 EEVWEVRPGGMLVQKRSPES-EPPPGGAPVPTIRVKVKYNGVYHEIYINSQASFGELKKL 265
Query: 106 VAARTGLHPDDQKVMYKDKERDSKAFLDMAGVKDRSKLVVVEDPXXXXXXXXXXXXNGHL 165
++ +TGLHPDDQKV+Y+DKERDSKAFLD+AGVKDRSK++++EDP +
Sbjct: 266 LSEKTGLHPDDQKVVYRDKERDSKAFLDIAGVKDRSKMLLLEDPTAQAKRLLEERRHCKA 325
Query: 166 XXXXXXXXXXXXXXDKLAPKVAALDASVRKGEKVAENDVVQVTELLMNELLKLDAVVADG 225
DKLA KV+AL+A V KG +V + DVV +TE LMNEL+KLD++ ADG
Sbjct: 326 ERAAKSVSRVALDVDKLASKVSALEAIVSKGGRVVDADVVALTEALMNELVKLDSIAADG 385
Query: 226 DVKAQRRLQVKRVQKYVETLD 246
+VK QRR+Q KRVQKYVE LD
Sbjct: 386 EVKEQRRVQEKRVQKYVEALD 406
>Os04g0619900 Ubiquitin domain containing protein
Length = 272
Score = 151 bits (381), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 89/213 (41%), Positives = 124/213 (58%), Gaps = 8/213 (3%)
Query: 49 WEVRPGGMLVQKR--------GGGADEEPVNVKPVPTIRVKVKHAGITHEIYINSQASFG 100
WEVRP GM+VQ R GGG P P I+V+VK+ HE+ ++S ASFG
Sbjct: 34 WEVRPSGMVVQAREEGPGGGGGGGGGMGIPPRPPPPEIKVRVKYGAARHEVAVSSIASFG 93
Query: 101 ELKKMVAARTGLHPDDQKVMYKDKERDSKAFLDMAGVKDRSKLVVVEDPXXXXXXXXXXX 160
ELKK++AARTGL DQ++ Y+ KER + +LD+ GVK+RSKL + EDP
Sbjct: 94 ELKKLLAARTGLPAADQRLTYRGKERGNADYLDVCGVKNRSKLYLAEDPTSVERRYIERQ 153
Query: 161 XNGHLXXXXXXXXXXXXXXDKLAPKVAALDASVRKGEKVAENDVVQVTELLMNELLKLDA 220
+ + DKLA +V +++ S+ +G KVAE + + ELLM +KLD+
Sbjct: 154 KSAKIETANRAIGAIALEVDKLADQVRSIEKSITRGSKVAEVQITTLIELLMRLAVKLDS 213
Query: 221 VVADGDVKAQRRLQVKRVQKYVETLDAVMAKNA 253
+ A+GD +Q+ +Q KRVQK VETLD + NA
Sbjct: 214 IHAEGDSSSQKNIQAKRVQKCVETLDVLKISNA 246
>Os01g0831200 Ubiquitin domain containing protein
Length = 262
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 78/207 (37%), Positives = 118/207 (57%), Gaps = 11/207 (5%)
Query: 49 WEVRPGGMLVQKRGGGADEEPVNVKPVPTIRVKVKHAGITHEIYINSQASFGELKKMVAA 108
WEVRPGGMLVQ+R G P +R++V H ++ + + ++FGELK ++
Sbjct: 19 WEVRPGGMLVQRRDGDTG---------PAVRLRVSHGASFRDVAVPAHSTFGELKGVLTQ 69
Query: 109 RTGLHPDDQKVMYKDKERDSKAFLDMAGVKDRSKLVVVEDPXXXXXXXXXX--XXNGHLX 166
TG+ P+ Q++ ++ KE+ FL AGVKD +KL+++E P + +
Sbjct: 70 ATGVEPERQRLFFRGKEKSDNEFLHTAGVKDGAKLLLLEKPAPANVEQRAEPVIMDESMM 129
Query: 167 XXXXXXXXXXXXXDKLAPKVAALDASVRKGEKVAENDVVQVTELLMNELLKLDAVVADGD 226
D+L+ KV L+ SV G K+ + D V +TELLM ELLKLD + A+G+
Sbjct: 130 KACEAVGRVRAEVDRLSAKVCDLEKSVFAGRKIEDKDFVVLTELLMMELLKLDGIEAEGE 189
Query: 227 VKAQRRLQVKRVQKYVETLDAVMAKNA 253
+AQR+ +V+RVQ VETLD + A+NA
Sbjct: 190 ARAQRKAEVRRVQGLVETLDKLKARNA 216
>Os01g0907200 Ubiquitin domain containing protein
Length = 172
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 67/106 (63%), Gaps = 5/106 (4%)
Query: 49 WEVRPGGMLVQKRGGGADEEPVNVK-----PVPTIRVKVKHAGITHEIYINSQASFGELK 103
WEVRPGGMLVQKR +++ + I V+V H++ I+S A+FG+LK
Sbjct: 41 WEVRPGGMLVQKRRAPEEQDDGSSSMSAHSGADAIVVRVSTGWQWHDVSIDSTATFGDLK 100
Query: 104 KMVAARTGLHPDDQKVMYKDKERDSKAFLDMAGVKDRSKLVVVEDP 149
M++ TGL P DQ+++YK KERD L M GV+D+ K++++EDP
Sbjct: 101 VMLSLVTGLWPRDQRLLYKGKERDDGDHLHMVGVQDKDKVLLLEDP 146
>AK058550
Length = 172
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 67/106 (63%), Gaps = 5/106 (4%)
Query: 49 WEVRPGGMLVQKRGGGADEEPVNVK-----PVPTIRVKVKHAGITHEIYINSQASFGELK 103
WEVRPGGMLVQKR +++ + I V+V H++ I+S A+FG+LK
Sbjct: 41 WEVRPGGMLVQKRRAPEEQDDGSSSMSAHSGADAIVVRVSTGWQWHDVSIDSTATFGDLK 100
Query: 104 KMVAARTGLHPDDQKVMYKDKERDSKAFLDMAGVKDRSKLVVVEDP 149
M++ TGL P DQ+++YK KERD L M GV+D+ K++++EDP
Sbjct: 101 VMLSLVTGLWPRDQRLLYKGKERDDGDHLHMVGVQDKDKVLLLEDP 146
>Os02g0597700 Ubiquitin domain containing protein
Length = 168
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 64/101 (63%), Gaps = 8/101 (7%)
Query: 49 WEVRPGGMLVQKRGGGADEEPVNVKPVPTIRVKVKHAGITHEIYINSQASFGELKKMVAA 108
WEVRPGGMLVQKR G EE I V+V H++ I + ++FGELK ++
Sbjct: 49 WEVRPGGMLVQKREGRGGEE--------VILVRVSTGFAWHDVSIAATSTFGELKVRLSM 100
Query: 109 RTGLHPDDQKVMYKDKERDSKAFLDMAGVKDRSKLVVVEDP 149
TGL P +Q+++++ KER+ L M GV+D+ K++++EDP
Sbjct: 101 VTGLEPREQRLLFRGKEREDTDHLHMVGVRDKDKVLLLEDP 141
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.131 0.367
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,181,509
Number of extensions: 225252
Number of successful extensions: 464
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 450
Number of HSP's successfully gapped: 8
Length of query: 339
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 237
Effective length of database: 11,709,973
Effective search space: 2775263601
Effective search space used: 2775263601
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 156 (64.7 bits)