BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0563000 Os05g0563000|AK100983
(314 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0563000 No apical meristem (NAM) protein domain contai... 482 e-136
Os01g0191300 No apical meristem (NAM) protein domain contai... 292 2e-79
Os02g0594800 No apical meristem (NAM) protein domain contai... 211 7e-55
Os01g0672100 No apical meristem (NAM) protein domain contai... 166 2e-41
Os04g0477300 No apical meristem (NAM) protein domain contai... 120 2e-27
Os06g0560300 No apical meristem (NAM) protein domain contai... 105 3e-23
Os05g0194500 No apical meristem (NAM) protein domain contai... 102 4e-22
Os04g0460600 Similar to NAM / CUC2-like protein 70 3e-12
Os03g0815100 Similar to OsNAC6 protein 66 3e-11
>Os05g0563000 No apical meristem (NAM) protein domain containing protein
Length = 314
Score = 482 bits (1240), Expect = e-136, Method: Compositional matrix adjust.
Identities = 241/314 (76%), Positives = 241/314 (76%)
Query: 1 MTWCNSFSDVRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMCPSCGHRARYEQETTTIQ 60
MTWCNSFSDVRT MCPSCGHRARYEQETTTIQ
Sbjct: 1 MTWCNSFSDVRTAVDSSLSPAAAVAAAAGKKAAASLAVLVKMCPSCGHRARYEQETTTIQ 60
Query: 61 DLPGLPAGVKFDPTDQELLEHLEGKARPDSRKLHPLVDEFIPTIEGENGICYTHPERLPG 120
DLPGLPAGVKFDPTDQELLEHLEGKARPDSRKLHPLVDEFIPTIEGENGICYTHPERLPG
Sbjct: 61 DLPGLPAGVKFDPTDQELLEHLEGKARPDSRKLHPLVDEFIPTIEGENGICYTHPERLPG 120
Query: 121 VSKDGLVRHFFHRPSKAYTTGTRKRRKVHSDEVDGGETRWHKTGKTRPVMANGRPRGYKK 180
VSKDGLVRHFFHRPSKAYTTGTRKRRKVHSDEVDGGETRWHKTGKTRPVMANGRPRGYKK
Sbjct: 121 VSKDGLVRHFFHRPSKAYTTGTRKRRKVHSDEVDGGETRWHKTGKTRPVMANGRPRGYKK 180
Query: 181 ILVLYTNYGKQRKPEKTNWVMHQYHLGSDEEERDGELVVSKVFFQTQPRQCGSTXXXXXX 240
ILVLYTNYGKQRKPEKTNWVMHQYHLGSDEEERDGELVVSKVFFQTQPRQCGST
Sbjct: 181 ILVLYTNYGKQRKPEKTNWVMHQYHLGSDEEERDGELVVSKVFFQTQPRQCGSTAAAAAA 240
Query: 241 XXXXXXXXXXXXNSNYSIVXXXXXXXXXSFLKEANVVHEFYDPAATMGYRXXXXXXXXXX 300
NSNYSIV SFLKEANVVHEFYDPAATMGYR
Sbjct: 241 KEASAAVAAAVVNSNYSIVHGHQGGGGGSFLKEANVVHEFYDPAATMGYRPPAPAAHFAP 300
Query: 301 XXXXXXXRNSFGGP 314
RNSFGGP
Sbjct: 301 NFAVHAARNSFGGP 314
>Os01g0191300 No apical meristem (NAM) protein domain containing protein
Length = 433
Score = 292 bits (748), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 137/190 (72%), Positives = 160/190 (84%), Gaps = 7/190 (3%)
Query: 43 CPSCGHRARYEQETTTIQDLPGLPAGVKFDPTDQELLEHLEGKARPDSRKLHPLVDEFIP 102
CPSCG++ + D GLPAGVKFDPTDQEL+EHLE K R + + HPL+DEFIP
Sbjct: 27 CPSCGNKLDCKP------DWVGLPAGVKFDPTDQELIEHLEAKVREEGSRSHPLIDEFIP 80
Query: 103 TIEGENGICYTHPERLPGVSKDGLVRHFFHRPSKAYTTGTRKRRKVHSD-EVDGGETRWH 161
TIEGE+GICYTHPE+LPGV++DGL +HFFHRPSKAYTTGTRKRRK+ ++ +V GETRWH
Sbjct: 81 TIEGEDGICYTHPEKLPGVTRDGLSKHFFHRPSKAYTTGTRKRRKIQTECDVQKGETRWH 140
Query: 162 KTGKTRPVMANGRPRGYKKILVLYTNYGKQRKPEKTNWVMHQYHLGSDEEERDGELVVSK 221
KTGKTRPVM +GR +G KKILVLYTN+GK RKPEKTNWVMHQYHLG EEE++GELVV K
Sbjct: 141 KTGKTRPVMVSGRQKGCKKILVLYTNFGKHRKPEKTNWVMHQYHLGDLEEEKEGELVVCK 200
Query: 222 VFFQTQPRQC 231
+F+QTQPRQC
Sbjct: 201 IFYQTQPRQC 210
>Os02g0594800 No apical meristem (NAM) protein domain containing protein
Length = 393
Score = 211 bits (536), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 105/190 (55%), Positives = 132/190 (69%), Gaps = 5/190 (2%)
Query: 43 CPSCGHRARYEQETTTIQDLPGLPAGVKFDPTDQELLEHLEGKARPDSRKLHPLVDEFIP 102
CP+C H + IQ PGLPAGVKFDP+D ELLEHLE K K H +DEFIP
Sbjct: 38 CPNCKHV--IDNSDVAIQ-WPGLPAGVKFDPSDLELLEHLEQKIGLGGSKPHTFIDEFIP 94
Query: 103 TIEGENGICYTHPERLPGVSKDGLVRHFFHRPSKAYTTGTRKRRKV-HSDEVDGGE-TRW 160
TI+ + GICY+HPE LPG+ KDG HFFHR S AY G RKRRK+ + D V E RW
Sbjct: 95 TIDNDEGICYSHPENLPGMKKDGTSGHFFHRVSNAYGCGQRKRRKISNCDHVVSVEHVRW 154
Query: 161 HKTGKTRPVMANGRPRGYKKILVLYTNYGKQRKPEKTNWVMHQYHLGSDEEERDGELVVS 220
HKTGK++ ++ G +G+KKI+VLY + + KP+K NWVMHQYHLG++E+E+DGELVVS
Sbjct: 155 HKTGKSKAIVEKGVTKGWKKIMVLYKSSQRGAKPDKANWVMHQYHLGAEEDEKDGELVVS 214
Query: 221 KVFFQTQPRQ 230
K+ +Q +Q
Sbjct: 215 KISYQLHGKQ 224
>Os01g0672100 No apical meristem (NAM) protein domain containing protein
Length = 252
Score = 166 bits (420), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 82/127 (64%), Positives = 88/127 (69%), Gaps = 4/127 (3%)
Query: 1 MTWCNSFSDVRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXM--CPSCGHRARYEQETT- 57
MTWCNSF+DVR + CPSCGHRA+YEQ
Sbjct: 1 MTWCNSFNDVRAVENNLATAAAVAAAKKQQQQQQVSQHVNLIKTCPSCGHRAQYEQAAAA 60
Query: 58 -TIQDLPGLPAGVKFDPTDQELLEHLEGKARPDSRKLHPLVDEFIPTIEGENGICYTHPE 116
TIQDLPGLPAGVKFDPTDQELLEHLEGKARPD+RKLHPL+DEFIPTIEGENGICYTHPE
Sbjct: 61 ATIQDLPGLPAGVKFDPTDQELLEHLEGKARPDARKLHPLIDEFIPTIEGENGICYTHPE 120
Query: 117 RLPGVSK 123
RLPG +
Sbjct: 121 RLPGTRQ 127
>Os04g0477300 No apical meristem (NAM) protein domain containing protein
Length = 176
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/126 (50%), Positives = 78/126 (61%), Gaps = 5/126 (3%)
Query: 43 CPSCGHRARYEQETTTIQDLPGLPAGVKFDPTDQELLEHLEGKARPDSRKLHPLVDEFIP 102
CP+C + + T+Q P P GVKFDP+D E+LEHLE K + L+D FIP
Sbjct: 46 CPNC--KCHIDNSDVTLQ-WPEFPDGVKFDPSDLEVLEHLERKINLGNPGPQGLIDHFIP 102
Query: 103 TIEGENGICYTHPERLPGVSKDGLVRHFFHRPSKAYTTGTRKRRKV-HSDEVDGGE-TRW 160
T+E GICYTHPE LPG+ DG HFFHR S AY +G RKRRK+ H+ E RW
Sbjct: 103 TLEKVEGICYTHPENLPGIKLDGTSSHFFHRISNAYGSGQRKRRKISHTGHAASDENIRW 162
Query: 161 HKTGKT 166
HKTGK+
Sbjct: 163 HKTGKS 168
>Os06g0560300 No apical meristem (NAM) protein domain containing protein
Length = 110
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 52/79 (65%), Positives = 58/79 (73%), Gaps = 7/79 (8%)
Query: 43 CPSCGHRARYEQETTTIQDLPGLPAGVKFDPTDQELLEHLEGKARPDSRKL-HPLVDEFI 101
CP CGH+ + D GLPAGVKFDPTDQEL+EHLE K RP HPL+DEFI
Sbjct: 38 CPRCGHKIDRKL------DWVGLPAGVKFDPTDQELIEHLEAKVRPGGEAAAHPLIDEFI 91
Query: 102 PTIEGENGICYTHPERLPG 120
PTIEGE+GICYTHPE+LPG
Sbjct: 92 PTIEGEDGICYTHPEKLPG 110
>Os05g0194500 No apical meristem (NAM) protein domain containing protein
Length = 104
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 47/79 (59%), Positives = 58/79 (73%), Gaps = 4/79 (5%)
Query: 43 CPSCGHRARYEQETTTIQDLPGLPAGVKFDPTDQELLEHLEGKARPDSRKLHPLVDEFIP 102
CPSCGH + + D+ G+PAGV+FDPTDQEL+EHLE K + HPL+DEFI
Sbjct: 30 CPSCGH----DPDCNKPFDMVGMPAGVRFDPTDQELIEHLEAKVKDGGSTSHPLIDEFIH 85
Query: 103 TIEGENGICYTHPERLPGV 121
TI+GE+GICYTHPE LPG+
Sbjct: 86 TIQGEDGICYTHPENLPGL 104
>Os04g0460600 Similar to NAM / CUC2-like protein
Length = 343
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 63/143 (44%), Gaps = 18/143 (12%)
Query: 65 LPAGVKFDPTDQELLEHLEGKARPDSRKLHPLVDEFIPTIEGENGICYTHPERLPGVSKD 124
LP G +F PTD+EL+ H K D+R F E + P LP ++K
Sbjct: 12 LPPGFRFHPTDEELITHYLAKKVADAR--------FAALAVAEADLNKCEPWDLPSLAKM 63
Query: 125 GLVR-HFFHRPSKAYTTGTRKRRKVHSDEVDGGETRWHKTGKTRPVMANGRPRGYKKILV 183
G +FF + Y TG R R S W TGK + + G KK LV
Sbjct: 64 GEKEWYFFCLKDRKYPTGLRTNRATESG-------YWKATGKDKDIFRRKALVGMKKTLV 116
Query: 184 LYTNYGKQRKPEKTNWVMHQYHL 206
YT G+ K EK+ WVMH+Y L
Sbjct: 117 FYT--GRAPKGEKSGWVMHEYRL 137
>Os03g0815100 Similar to OsNAC6 protein
Length = 316
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 62/143 (43%), Gaps = 18/143 (12%)
Query: 65 LPAGVKFDPTDQELLEHLEGKARPDSRKLHPLVDEFIPTIEGENGICYTHPERLPGVSKD 124
LP G +F PTD EL+EH + R P++ E + P LP +
Sbjct: 17 LPPGFRFHPTDDELVEHYLCRKAAGQRLPVPII--------AEVDLYKFDPWDLPERALF 68
Query: 125 GLVRHFFHRP-SKAYTTGTRKRRKVHSDEVDGGETRWHKTGKTRPVMANGRPRGYKKILV 183
G +F P + Y G+R R G W TG +PV GR G KK LV
Sbjct: 69 GAREWYFFTPRDRKYPNGSRPNRA-------AGNGYWKATGADKPVAPRGRTLGIKKALV 121
Query: 184 LYTNYGKQRKPEKTNWVMHQYHL 206
Y GK + KT+W+MH+Y L
Sbjct: 122 FYA--GKAPRGVKTDWIMHEYRL 142
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.135 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,612,793
Number of extensions: 414238
Number of successful extensions: 1207
Number of sequences better than 1.0e-10: 16
Number of HSP's gapped: 1231
Number of HSP's successfully gapped: 16
Length of query: 314
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 213
Effective length of database: 11,762,187
Effective search space: 2505345831
Effective search space used: 2505345831
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)