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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0594800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : No apical meristem (NAM) protein domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.82 (0.0342) R2 : 0.692
β1 : -1.2 (0.168) R2dD : 0.0704 R2D : 0.204
β2 : 0.756 (0.0811) R2dC : 0.0592 R2C : 0.0479
β3 : -2.42 (0.175) R2dE : 0.281 R2E : 0.519
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.622 (0.0822) R2dN8 : 0.0721 R2N8 : 0.106
σ : 0.611
deviance : 172.37
__
_____
C
peak time of C : 9.06
E
wheather : temperature
threshold : 19.03
memory length : 7983
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
170.8 0.614 5.71 -1.17 0.787 -1.39 -0.762 2.65 -0.543 9.1 21 4666 -- --
173.64 0.614 5.79 -1.13 0.837 -2.31 -0.0463 -- -0.567 9.01 19.01 7967 -- --
172.71 0.612 5.71 -1.19 0.781 -1.37 -- 2.69 -0.538 9.17 21.04 4730 -- --
172.37 0.611 5.82 -1.2 0.756 -2.42 -- -- -0.622 9.06 19.03 7983 -- --
205.61 0.668 5.74 -1.16 -- -1.34 -- 2.78 -0.524 -- 21.3 3689 -- --
243.34 0.731 5.95 -2.81 0.792 -- -0.643 -- -1.22 9.19 -- -- -- --
244.79 0.733 5.95 -2.83 0.793 -- -- -- -1.22 9.25 -- -- -- --
205.17 0.667 5.83 -1.17 -- -2.51 -- -- -0.614 -- 18.93 7976 -- --
189.99 0.642 5.76 -- 0.866 -2.85 -- -- -0.434 8.84 18.7 14653 -- --
281.38 0.784 5.97 -2.84 -- -- -- -- -1.22 -- -- -- -- --
456.26 0.999 5.88 -- 0.795 -- -- -- -0.907 9.51 -- -- -- --
220.85 0.692 5.78 -- -- -2.85 -- -- -0.347 -- 17.98 28146 -- --
493.49 1.04 5.9 -- -- -- -- -- -0.904 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 169.71 temperature 15 270 > th dose dependent sin 9 NA
4 172.10 temperature 25 270 < th dose dependent rect. 15 20
6 172.42 temperature 25 4320 < th dose dependent rect. 20 1
15 173.02 temperature 30 270 < th dose dependent sin 9 NA
17 173.09 humidity 70 43200 < th dose dependent rect. 1 11
22 173.20 humidity 80 43200 > th dose independent rect. 5 4
25 173.22 temperature 25 4320 < th dose dependent rect. 17 10
26 173.23 humidity 90 43200 < th dose dependent rect. 6 4
29 173.24 humidity 90 43200 < th dose dependent rect. 7 2
33 173.28 temperature 20 4320 > th dose dependent rect. 17 1
36 173.29 wind 1 43200 > th dose independent rect. 23 3
39 173.32 temperature 20 4320 > th dose independent rect. 16 19
44 173.36 humidity 70 43200 < th dose dependent rect. 8 2
47 173.39 temperature 20 4320 < th dose independent rect. 16 19
54 173.42 temperature 20 4320 > th dose independent rect. 14 16
67 173.46 humidity 70 43200 < th dose dependent rect. 6 5
116 173.62 temperature 20 4320 > th dose independent sin 15 NA
127 173.67 temperature 20 4320 > th dose independent rect. 8 23
128 173.68 humidity 80 43200 > th dose independent rect. 4 6
140 173.70 temperature 10 4320 > th dose dependent rect. 20 1
141 173.70 wind 1 14400 < th dose dependent rect. 21 7
149 173.72 temperature 20 4320 < th dose independent rect. 14 16
214 173.88 wind 1 14400 < th dose independent rect. 22 4
221 173.90 temperature 20 4320 < th dose independent rect. 8 23
233 173.93 temperature 20 4320 > th dose independent no NA NA
240 173.94 humidity 80 43200 < th dose independent rect. 4 6
247 173.95 humidity 60 43200 < th dose dependent rect. 13 1
252 173.97 temperature 20 4320 > th dose independent rect. 1 23
253 173.97 temperature 20 4320 > th dose independent rect. 21 23
261 173.99 temperature 25 4320 < th dose dependent sin 14 NA
303 174.09 temperature 20 4320 < th dose independent sin 14 NA
310 174.11 temperature 20 4320 > th dose independent rect. 17 8
318 174.13 temperature 20 4320 < th dose independent no NA NA
321 174.13 temperature 20 4320 < th dose independent rect. 22 23
336 174.15 temperature 20 4320 > th dose independent rect. 4 23
343 174.15 temperature 25 4320 < th dose dependent rect. 17 19
351 174.18 humidity 60 43200 < th dose independent sin 7 NA
355 174.18 temperature 20 4320 < th dose independent rect. 1 23
358 174.19 temperature 25 4320 < th dose independent rect. 11 16
369 174.20 temperature 15 4320 > th dose dependent rect. 17 10
405 174.26 humidity 70 43200 < th dose dependent sin 7 NA
443 174.31 humidity 60 43200 < th dose dependent sin 4 NA
484 174.36 humidity 50 43200 > th dose dependent rect. 7 2
489 174.37 humidity 60 43200 > th dose independent sin 7 NA
501 174.38 temperature 20 4320 < th dose independent rect. 4 23
530 174.41 temperature 30 4320 < th dose dependent rect. 17 1
618 174.51 wind 1 43200 < th dose dependent rect. 10 18
664 174.56 temperature 25 4320 < th dose dependent rect. 8 21
720 174.63 radiation 1 14400 > th dose independent rect. 9 3
729 174.64 humidity 70 43200 < th dose independent rect. 24 20
737 174.65 humidity 70 43200 < th dose independent rect. 24 18
768 174.68 humidity 80 43200 > th dose independent rect. 2 8
770 174.68 humidity 70 43200 < th dose independent rect. 1 13
775 174.69 radiation 1 14400 < th dose independent rect. 9 3
776 174.69 temperature 20 4320 < th dose independent rect. 17 8
781 174.69 wind 1 14400 < th dose dependent rect. 18 10
790 174.71 temperature 20 4320 < th dose independent rect. 22 17
876 174.80 humidity 70 43200 < th dose independent sin 4 NA
884 174.81 temperature 20 4320 > th dose independent rect. 22 17
937 174.86 humidity 60 43200 < th dose dependent rect. 16 23
987 174.94 humidity 70 43200 > th dose independent rect. 2 12