BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0594800 Os02g0594800|AK121953
(393 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0594800 No apical meristem (NAM) protein domain contai... 819 0.0
Os01g0191300 No apical meristem (NAM) protein domain contai... 216 3e-56
Os04g0477300 No apical meristem (NAM) protein domain contai... 213 2e-55
Os05g0563000 No apical meristem (NAM) protein domain contai... 211 8e-55
Os06g0560300 No apical meristem (NAM) protein domain contai... 97 2e-20
Os01g0672100 No apical meristem (NAM) protein domain contai... 92 7e-19
Os05g0194500 No apical meristem (NAM) protein domain contai... 92 9e-19
Os06g0267500 Similar to NAM1 protein (Fragment) 72 6e-13
Os08g0157900 Similar to NAM protein 66 6e-11
>Os02g0594800 No apical meristem (NAM) protein domain containing protein
Length = 393
Score = 819 bits (2116), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/393 (100%), Positives = 393/393 (100%)
Query: 1 MARSWLITGRGVAKKIRNAPHCSSRPISELGAEAQMECPNCKHVIDNSDVAIQWPGLPAG 60
MARSWLITGRGVAKKIRNAPHCSSRPISELGAEAQMECPNCKHVIDNSDVAIQWPGLPAG
Sbjct: 1 MARSWLITGRGVAKKIRNAPHCSSRPISELGAEAQMECPNCKHVIDNSDVAIQWPGLPAG 60
Query: 61 VKFDPSDLELLEHLEQKIGLGGSKPHTFIDEFIPTIDNDEGICYSHPENLPGMKKDGTSG 120
VKFDPSDLELLEHLEQKIGLGGSKPHTFIDEFIPTIDNDEGICYSHPENLPGMKKDGTSG
Sbjct: 61 VKFDPSDLELLEHLEQKIGLGGSKPHTFIDEFIPTIDNDEGICYSHPENLPGMKKDGTSG 120
Query: 121 HFFHRVSNAYGCGQRKRRKISNCDHVVSVEHVRWHKTGKSKAIVEKGVTKGWKKIMVLYK 180
HFFHRVSNAYGCGQRKRRKISNCDHVVSVEHVRWHKTGKSKAIVEKGVTKGWKKIMVLYK
Sbjct: 121 HFFHRVSNAYGCGQRKRRKISNCDHVVSVEHVRWHKTGKSKAIVEKGVTKGWKKIMVLYK 180
Query: 181 SSQRGAKPDKANWVMHQYHLGAEEDEKDGELVVSKISYQLHGKQIDKSETGNADEESDAF 240
SSQRGAKPDKANWVMHQYHLGAEEDEKDGELVVSKISYQLHGKQIDKSETGNADEESDAF
Sbjct: 181 SSQRGAKPDKANWVMHQYHLGAEEDEKDGELVVSKISYQLHGKQIDKSETGNADEESDAF 240
Query: 241 AARVGPKTPKSNTPQPCRLKNSPCETENYDPILEDQDEEESNIPIVSLKDDAGNPAWCAG 300
AARVGPKTPKSNTPQPCRLKNSPCETENYDPILEDQDEEESNIPIVSLKDDAGNPAWCAG
Sbjct: 241 AARVGPKTPKSNTPQPCRLKNSPCETENYDPILEDQDEEESNIPIVSLKDDAGNPAWCAG 300
Query: 301 ETQAAREAVQACPNLDESLRCHEVLDSFYHETLLPSDRPILSQGGNEILDRNLNAVYGLP 360
ETQAAREAVQACPNLDESLRCHEVLDSFYHETLLPSDRPILSQGGNEILDRNLNAVYGLP
Sbjct: 301 ETQAAREAVQACPNLDESLRCHEVLDSFYHETLLPSDRPILSQGGNEILDRNLNAVYGLP 360
Query: 361 DLYNVDLGTPPDFQLADLQFGSQESIGNWLDSI 393
DLYNVDLGTPPDFQLADLQFGSQESIGNWLDSI
Sbjct: 361 DLYNVDLGTPPDFQLADLQFGSQESIGNWLDSI 393
>Os01g0191300 No apical meristem (NAM) protein domain containing protein
Length = 433
Score = 216 bits (550), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 107/188 (56%), Positives = 132/188 (70%), Gaps = 6/188 (3%)
Query: 38 CPNCKHVIDNSDVAIQWPGLPAGVKFDPSDLELLEHLEQKIGLGGSKPHTFIDEFIPTID 97
CP+C + +D W GLPAGVKFDP+D EL+EHLE K+ GS+ H IDEFIPTI+
Sbjct: 27 CPSCGNKLD---CKPDWVGLPAGVKFDPTDQELIEHLEAKVREEGSRSHPLIDEFIPTIE 83
Query: 98 NDEGICYSHPENLPGMKKDGTSGHFFHRVSNAYGCGQRKRRKI-SNCDHVVSVEHVRWHK 156
++GICY+HPE LPG+ +DG S HFFHR S AY G RKRRKI + CD V RWHK
Sbjct: 84 GEDGICYTHPEKLPGVTRDGLSKHFFHRPSKAYTTGTRKRRKIQTECD--VQKGETRWHK 141
Query: 157 TGKSKAIVEKGVTKGWKKIMVLYKSSQRGAKPDKANWVMHQYHLGAEEDEKDGELVVSKI 216
TGK++ ++ G KG KKI+VLY + + KP+K NWVMHQYHLG E+EK+GELVV KI
Sbjct: 142 TGKTRPVMVSGRQKGCKKILVLYTNFGKHRKPEKTNWVMHQYHLGDLEEEKEGELVVCKI 201
Query: 217 SYQLHGKQ 224
YQ +Q
Sbjct: 202 FYQTQPRQ 209
>Os04g0477300 No apical meristem (NAM) protein domain containing protein
Length = 176
Score = 213 bits (542), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 104/160 (65%), Positives = 119/160 (74%), Gaps = 1/160 (0%)
Query: 2 ARSWLITG-RGVAKKIRNAPHCSSRPISELGAEAQMECPNCKHVIDNSDVAIQWPGLPAG 60
R W+I G + +A KIRNA S + EL EA ECPNCK IDNSDV +QWP P G
Sbjct: 9 CRPWIIAGGKVIATKIRNATQLLSCKLGELVPEAWRECPNCKCHIDNSDVTLQWPEFPDG 68
Query: 61 VKFDPSDLELLEHLEQKIGLGGSKPHTFIDEFIPTIDNDEGICYSHPENLPGMKKDGTSG 120
VKFDPSDLE+LEHLE+KI LG P ID FIPT++ EGICY+HPENLPG+K DGTS
Sbjct: 69 VKFDPSDLEVLEHLERKINLGNPGPQGLIDHFIPTLEKVEGICYTHPENLPGIKLDGTSS 128
Query: 121 HFFHRVSNAYGCGQRKRRKISNCDHVVSVEHVRWHKTGKS 160
HFFHR+SNAYG GQRKRRKIS+ H S E++RWHKTGKS
Sbjct: 129 HFFHRISNAYGSGQRKRRKISHTGHAASDENIRWHKTGKS 168
>Os05g0563000 No apical meristem (NAM) protein domain containing protein
Length = 314
Score = 211 bits (537), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 105/190 (55%), Positives = 132/190 (69%), Gaps = 5/190 (2%)
Query: 38 CPNCKHV--IDNSDVAIQ-WPGLPAGVKFDPSDLELLEHLEQKIGLGGSKPHTFIDEFIP 94
CP+C H + IQ PGLPAGVKFDP+D ELLEHLE K K H +DEFIP
Sbjct: 43 CPSCGHRARYEQETTTIQDLPGLPAGVKFDPTDQELLEHLEGKARPDSRKLHPLVDEFIP 102
Query: 95 TIDNDEGICYSHPENLPGMKKDGTSGHFFHRVSNAYGCGQRKRRKISNCDHVVSVEHVRW 154
TI+ + GICY+HPE LPG+ KDG HFFHR S AY G RKRRK+ + D V E RW
Sbjct: 103 TIEGENGICYTHPERLPGVSKDGLVRHFFHRPSKAYTTGTRKRRKV-HSDEVDGGE-TRW 160
Query: 155 HKTGKSKAIVEKGVTKGWKKIMVLYKSSQRGAKPDKANWVMHQYHLGAEEDEKDGELVVS 214
HKTGK++ ++ G +G+KKI+VLY + + KP+K NWVMHQYHLG++E+E+DGELVVS
Sbjct: 161 HKTGKTRPVMANGRPRGYKKILVLYTNYGKQRKPEKTNWVMHQYHLGSDEEERDGELVVS 220
Query: 215 KISYQLHGKQ 224
K+ +Q +Q
Sbjct: 221 KVFFQTQPRQ 230
>Os06g0560300 No apical meristem (NAM) protein domain containing protein
Length = 110
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/76 (60%), Positives = 55/76 (72%), Gaps = 4/76 (5%)
Query: 38 CPNCKHVIDNSDVAIQWPGLPAGVKFDPSDLELLEHLEQKIGLGG-SKPHTFIDEFIPTI 96
CP C H ID + W GLPAGVKFDP+D EL+EHLE K+ GG + H IDEFIPTI
Sbjct: 38 CPRCGHKIDRK---LDWVGLPAGVKFDPTDQELIEHLEAKVRPGGEAAAHPLIDEFIPTI 94
Query: 97 DNDEGICYSHPENLPG 112
+ ++GICY+HPE LPG
Sbjct: 95 EGEDGICYTHPEKLPG 110
>Os01g0672100 No apical meristem (NAM) protein domain containing protein
Length = 252
Score = 92.0 bits (227), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 46/83 (55%), Positives = 54/83 (65%), Gaps = 5/83 (6%)
Query: 38 CPNCKHVID----NSDVAIQ-WPGLPAGVKFDPSDLELLEHLEQKIGLGGSKPHTFIDEF 92
CP+C H + IQ PGLPAGVKFDP+D ELLEHLE K K H IDEF
Sbjct: 45 CPSCGHRAQYEQAAAAATIQDLPGLPAGVKFDPTDQELLEHLEGKARPDARKLHPLIDEF 104
Query: 93 IPTIDNDEGICYSHPENLPGMKK 115
IPTI+ + GICY+HPE LPG ++
Sbjct: 105 IPTIEGENGICYTHPERLPGTRQ 127
>Os05g0194500 No apical meristem (NAM) protein domain containing protein
Length = 104
Score = 91.7 bits (226), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 43/76 (56%), Positives = 54/76 (71%), Gaps = 1/76 (1%)
Query: 38 CPNCKHVIDNSDVAIQWPGLPAGVKFDPSDLELLEHLEQKIGLGGSKPHTFIDEFIPTID 97
CP+C H D + G+PAGV+FDP+D EL+EHLE K+ GGS H IDEFI TI
Sbjct: 30 CPSCGHDPD-CNKPFDMVGMPAGVRFDPTDQELIEHLEAKVKDGGSTSHPLIDEFIHTIQ 88
Query: 98 NDEGICYSHPENLPGM 113
++GICY+HPENLPG+
Sbjct: 89 GEDGICYTHPENLPGL 104
>Os06g0267500 Similar to NAM1 protein (Fragment)
Length = 246
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 73/246 (29%), Positives = 104/246 (42%), Gaps = 39/246 (15%)
Query: 176 MVLYKSSQRGAKPDKANWVMHQYHLGAEEDEKDGELVVSKISYQLHGKQIDKSETGNADE 235
MVLY S+ +G KP+K NWVMHQYHLG EDE +G+ VVSK+ +Q +Q E D
Sbjct: 1 MVLYMSTMKGGKPEKTNWVMHQYHLGTGEDEVEGQYVVSKLLFQ---QQFKPGEKNAQDL 57
Query: 236 ES-DAFAARVGPKTPKSNTPQPCR---LKNSPCETENYDPILEDQDEEESNIP------- 284
S DA + V P P P N E + DQ +E S I
Sbjct: 58 TSADALESIVAEDLPNI-PPLPLEEHVFTNQELEVLEKSETITDQGKETSEINNEDNAVE 116
Query: 285 ----IVSLKDDAG------NPAWCAGETQAAREAVQACPNLDESLRCHEVLDSFYHETLL 334
+ + K + G +P W GE+Q ++ Q NL C E L S +
Sbjct: 117 DVAHMATEKPEDGDNPSSQDPKWWEGESQFLLDSQQLAENL---AICDEFLQSQSQTSCG 173
Query: 335 PSD------RP---ILSQGGNEILDRNLNAVYGL--PDLYNVDLGTPPDFQLADLQFGSQ 383
D +P + +Q E L ++L L D N++L +F+L+ ++F
Sbjct: 174 GGDDETDKIKPRLAVYAQLPVEDLKKDLEECQRLDPSDGTNLELENASEFRLSQIEFSQD 233
Query: 384 ESIGNW 389
W
Sbjct: 234 SFTTAW 239
>Os08g0157900 Similar to NAM protein
Length = 729
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 76/265 (28%), Positives = 108/265 (40%), Gaps = 48/265 (18%)
Query: 57 LPAGVKFDPSDLELLEHLEQKIGLGGSKPHTFIDEFIPTIDNDEGICYSHPENLPG---M 113
LP G +F P+D EL+ H + G + + IP ID +C P +LP +
Sbjct: 9 LPLGFRFHPTDEELVRHYLKGKITGQIRSEA---DVIPEID----VCKCEPWDLPDKSLI 61
Query: 114 KKDGTSGHFFHRVSNAYGCGQRKRRKISNCDHVVSVEHVRWHKTGKSKAIVEKGVTK--- 170
+ D FF Y G R R + E W TGK + I KG K
Sbjct: 62 RSDDPEWFFFAPKDRKYPNGSRSNR---------ATEAGYWKATGKDRVIRSKGDKKKQQ 112
Query: 171 --GWKKIMVLYKSSQRGAKPDKANWVMHQYHLGAEEDE--KDGELVVSKISYQLHGKQID 226
G KK +V ++ R K ++ W+MH+Y E E + G V+ Y+L KQ +
Sbjct: 113 VIGMKKTLVFHRG--RAPKGERTGWIMHEYRTTEPEFESGEQGGYVL----YRLFRKQEE 166
Query: 227 KSETGNADEESDAFAARVG-PKTPKSNTP---QPCRLKNSPCETENYDPILEDQDEEESN 282
K E + DE R G TP +TP +P N+P E+ + L ES
Sbjct: 167 KIERPSPDE-----VDRSGYSPTPSRSTPDNMEPIEDGNTPLNRESPESAL-----HESP 216
Query: 283 IPIVSLKDDAGNPA--WCAGETQAA 305
I + +L + P W A T A
Sbjct: 217 IDLPALTEAQAAPITRWLADRTDNA 241
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.134 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,500,622
Number of extensions: 721161
Number of successful extensions: 1587
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 1591
Number of HSP's successfully gapped: 9
Length of query: 393
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 290
Effective length of database: 11,657,759
Effective search space: 3380750110
Effective search space used: 3380750110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 157 (65.1 bits)