Os06g0267500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to NAM1 protein (Fragment).
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Os06g0267500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to NAM1 protein (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 54.36 | 0.346 | 9.38 | -0.66 | 0.355 | -0.578 | -0.157 | 0.422 | 0.0641 | 0.344 | 20 | 400 | -- | -- |
| 54.58 | 0.344 | 9.37 | -0.617 | 0.374 | -0.641 | -0.137 | -- | 0.0913 | 0.157 | 19.6 | 411 | -- | -- |
| 54.2 | 0.343 | 9.38 | -0.668 | 0.356 | -0.639 | -- | 0.435 | 0.0652 | 0.422 | 19.5 | 412 | -- | -- |
| 54.54 | 0.344 | 9.36 | -0.641 | 0.348 | -0.709 | -- | -- | 0.0868 | 0.381 | 19.6 | 396 | -- | -- |
| 59.56 | 0.359 | 9.37 | -0.699 | -- | -0.753 | -- | 0.348 | 0.0536 | -- | 19.45 | 650 | -- | -- |
| 66.09 | 0.381 | 9.34 | -0.383 | 0.349 | -- | -0.151 | -- | 0.197 | 23.6 | -- | -- | -- | -- |
| 66.18 | 0.381 | 9.34 | -0.377 | 0.35 | -- | -- | -- | 0.197 | 23.7 | -- | -- | -- | -- |
| 59.85 | 0.36 | 9.38 | -0.673 | -- | -0.814 | -- | -- | 0.0447 | -- | 19.5 | 652 | -- | -- |
| 63.28 | 0.37 | 9.35 | -- | 0.349 | -0.461 | -- | -- | 0.17 | 0.175 | 20.06 | 381 | -- | -- |
| 73.88 | 0.402 | 9.33 | -0.367 | -- | -- | -- | -- | 0.201 | -- | -- | -- | -- | -- |
| 69.93 | 0.391 | 9.33 | -- | 0.346 | -- | -- | -- | 0.239 | 23.6 | -- | -- | -- | -- |
| 69.56 | 0.388 | 9.34 | -- | -- | -0.563 | -- | -- | 0.168 | -- | 19.41 | 630 | -- | -- |
| 77.43 | 0.411 | 9.32 | -- | -- | -- | -- | -- | 0.242 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 53.02 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 2 | 53.36 | temperature | 20 | 90 | < th | dose independent | rect. | 21 | 17 |
| 4 | 53.50 | temperature | 20 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 6 | 53.53 | temperature | 20 | 90 | < th | dose independent | rect. | 21 | 15 |
| 33 | 53.92 | temperature | 20 | 1440 | < th | dose dependent | rect. | 4 | 2 |
| 38 | 53.95 | temperature | 20 | 10 | < th | dose independent | rect. | 21 | 17 |
| 43 | 53.96 | temperature | 20 | 270 | > th | dose independent | rect. | 11 | 23 |
| 71 | 54.08 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 85 | 54.14 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 23 |
| 161 | 54.56 | temperature | 25 | 270 | < th | dose dependent | rect. | 20 | 16 |
| 172 | 54.60 | temperature | 20 | 270 | < th | dose independent | rect. | 5 | 23 |
| 195 | 54.69 | temperature | 20 | 270 | > th | dose independent | rect. | 2 | 23 |
| 220 | 54.77 | temperature | 20 | 270 | < th | dose independent | no | NA | NA |
| 237 | 54.81 | temperature | 20 | 270 | > th | dose independent | no | NA | NA |
| 281 | 54.95 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 1 |
| 343 | 55.15 | humidity | 90 | 4320 | > th | dose dependent | rect. | 7 | 3 |
| 349 | 55.18 | temperature | 20 | 270 | > th | dose independent | rect. | 16 | 15 |
| 350 | 55.18 | temperature | 20 | 270 | > th | dose independent | rect. | 15 | 17 |
| 353 | 55.19 | temperature | 20 | 30 | > th | dose independent | no | NA | NA |
| 361 | 55.21 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 14 |
| 371 | 55.24 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 7 |
| 385 | 55.26 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 1 |
| 418 | 55.30 | temperature | 20 | 90 | > th | dose independent | rect. | 5 | 23 |
| 420 | 55.30 | humidity | 80 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 435 | 55.34 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 14 |
| 454 | 55.37 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 8 |
| 468 | 55.39 | humidity | 80 | 14400 | > th | dose dependent | rect. | 3 | 4 |
| 519 | 55.46 | temperature | 20 | 1440 | < th | dose independent | sin | 6 | NA |
| 525 | 55.47 | temperature | 20 | 90 | < th | dose independent | sin | 9 | NA |
| 539 | 55.48 | wind | 3 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 549 | 55.49 | temperature | 20 | 30 | > th | dose independent | rect. | 17 | 23 |
| 571 | 55.51 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 23 |
| 596 | 55.55 | temperature | 20 | 30 | > th | dose independent | sin | 8 | NA |
| 609 | 55.56 | humidity | 90 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 623 | 55.57 | temperature | 20 | 1440 | > th | dose independent | sin | 6 | NA |
| 675 | 55.61 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 712 | 55.65 | temperature | 20 | 270 | > th | dose independent | sin | 9 | NA |
| 718 | 55.66 | temperature | 20 | 720 | < th | dose independent | sin | 12 | NA |
| 829 | 55.76 | temperature | 25 | 720 | < th | dose dependent | rect. | 18 | 12 |
| 860 | 55.79 | humidity | 90 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 909 | 55.84 | temperature | 20 | 720 | > th | dose independent | sin | 13 | NA |