BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0267500 Os06g0267500|AK060434
         (246 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0267500  Similar to NAM1 protein (Fragment)                  504   e-143
Os02g0594800  No apical meristem (NAM) protein domain contai...    72   3e-13
Os05g0563000  No apical meristem (NAM) protein domain contai...    64   7e-11

>Os06g0267500 Similar to NAM1 protein (Fragment)
          Length = 246

 Score =  504 bits (1299), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 246/246 (100%), Positives = 246/246 (100%)

Query: 1   MVLYMSTMKGGKPEKTNWVMHQYHLGTGEDEVEGQYVVSKLLFQQQFKPGEKNAQDLTSA 60
           MVLYMSTMKGGKPEKTNWVMHQYHLGTGEDEVEGQYVVSKLLFQQQFKPGEKNAQDLTSA
Sbjct: 1   MVLYMSTMKGGKPEKTNWVMHQYHLGTGEDEVEGQYVVSKLLFQQQFKPGEKNAQDLTSA 60

Query: 61  DALESIVAEDLPNIPPLPLEEHVFTNQELEVLEKSETITDQGKETSEINNEDNAVEDVAH 120
           DALESIVAEDLPNIPPLPLEEHVFTNQELEVLEKSETITDQGKETSEINNEDNAVEDVAH
Sbjct: 61  DALESIVAEDLPNIPPLPLEEHVFTNQELEVLEKSETITDQGKETSEINNEDNAVEDVAH 120

Query: 121 MATEKPEDGDNPSSQDPKWWEGESQFLLDSQQLAENLAICDEFLQSQSQTSCGGGDDETD 180
           MATEKPEDGDNPSSQDPKWWEGESQFLLDSQQLAENLAICDEFLQSQSQTSCGGGDDETD
Sbjct: 121 MATEKPEDGDNPSSQDPKWWEGESQFLLDSQQLAENLAICDEFLQSQSQTSCGGGDDETD 180

Query: 181 KIKPRLAVYAQLPVEDLKKDLEECQRLDPSDGTNLELENASEFRLSQIEFSQDSFTTAWA 240
           KIKPRLAVYAQLPVEDLKKDLEECQRLDPSDGTNLELENASEFRLSQIEFSQDSFTTAWA
Sbjct: 181 KIKPRLAVYAQLPVEDLKKDLEECQRLDPSDGTNLELENASEFRLSQIEFSQDSFTTAWA 240

Query: 241 GGKVID 246
           GGKVID
Sbjct: 241 GGKVID 246



>Os02g0594800 No apical meristem (NAM) protein domain containing protein
          Length = 393

 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 104/246 (42%), Gaps = 39/246 (15%)

Query: 1   MVLYMSTMKGGKPEKTNWVMHQYHLGTGEDEVEGQYVVSKLLFQ---QQFKPGEKNAQDL 57
           MVLY S+ +G KP+K NWVMHQYHLG  EDE +G+ VVSK+ +Q   +Q    E    D 
Sbjct: 176 MVLYKSSQRGAKPDKANWVMHQYHLGAEEDEKDGELVVSKISYQLHGKQIDKSETGNADE 235

Query: 58  TSADALESIVAEDLPNI-PPLPLEEHVFTNQELEVLEKSETITDQGKETSEINNEDNAVE 116
            S DA  + V    P    P P       N   E       + DQ +E S I        
Sbjct: 236 ES-DAFAARVGPKTPKSNTPQPCR---LKNSPCETENYDPILEDQDEEESNIP------- 284

Query: 117 DVAHMATEKPEDGDNPSSQDPKWWEGESQFLLDSQQLAENL---AICDEFLQSQSQTSCG 173
               + + K + G      +P W  GE+Q   ++ Q   NL     C E L S    +  
Sbjct: 285 ----IVSLKDDAG------NPAWCAGETQAAREAVQACPNLDESLRCHEVLDSFYHETLL 334

Query: 174 GGDDETDKIKPRLAVYAQLPVEDLKKDLEECQRLDPSDGTNLELENASEFRLSQIEFSQD 233
             D      +P   + +Q   E L ++L     L   D  N++L    +F+L+ ++F   
Sbjct: 335 PSD------RP---ILSQGGNEILDRNLNAVYGL--PDLYNVDLGTPPDFQLADLQFGSQ 383

Query: 234 SFTTAW 239
                W
Sbjct: 384 ESIGNW 389



>Os05g0563000 No apical meristem (NAM) protein domain containing protein
          Length = 314

 Score = 64.3 bits (155), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 36/46 (78%)

Query: 1   MVLYMSTMKGGKPEKTNWVMHQYHLGTGEDEVEGQYVVSKLLFQQQ 46
           +VLY +  K  KPEKTNWVMHQYHLG+ E+E +G+ VVSK+ FQ Q
Sbjct: 182 LVLYTNYGKQRKPEKTNWVMHQYHLGSDEEERDGELVVSKVFFQTQ 227



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.308    0.128    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,091,630
Number of extensions: 375685
Number of successful extensions: 1146
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1145
Number of HSP's successfully gapped: 3
Length of query: 246
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 148
Effective length of database: 11,918,829
Effective search space: 1763986692
Effective search space used: 1763986692
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 155 (64.3 bits)