BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0267500 Os06g0267500|AK060434
(246 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G25580.1 | chr1:8997064-8999600 REVERSE LENGTH=450 145 2e-35
AT5G14490.1 | chr5:4670779-4672072 REVERSE LENGTH=351 69 3e-12
AT4G29230.1 | chr4:14410338-14414956 FORWARD LENGTH=499 68 5e-12
AT3G01600.1 | chr3:229365-231105 FORWARD LENGTH=371 67 8e-12
AT4G28500.1 | chr4:14083014-14084266 FORWARD LENGTH=306 67 1e-11
AT5G56620.1 | chr5:22918521-22921139 REVERSE LENGTH=387 65 4e-11
AT1G28470.1 | chr1:10010259-10011867 FORWARD LENGTH=315 64 1e-10
>AT1G25580.1 | chr1:8997064-8999600 REVERSE LENGTH=450
Length = 449
Score = 145 bits (366), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 112/287 (39%), Positives = 152/287 (52%), Gaps = 54/287 (18%)
Query: 1 MVLYMSTMKGGKPEKTNWVMHQYHLGTGEDEVEGQYVVSKLLFQQQ----FKPGEKNAQD 56
MVLY GGK KTNWVMHQYHLG EDE EG YVVSK+ +QQ K G+K Q+
Sbjct: 173 MVLY-----GGKAVKTNWVMHQYHLGIEEDEKEGDYVVSKIFYQQPQQLVVKRGDKAEQE 227
Query: 57 LTSADALESIVAEDLPNIPPLPLEE-----------HVFTN----------QELEVLEKS 95
+ S D ++ P P L E H+ ++ E+ + E S
Sbjct: 228 V-SEDIFAAVTPTADPVTPKLATPEPRNAVRICSDSHIASDYVTPSDYVSAHEVSLAETS 286
Query: 96 ETITDQGK-ETSEINNE--------DNAVEDVAHMAT------EKPEDGDNPSSQDPKWW 140
E + + + ++ + N+E ++ +E+ A EK D +N +DP W+
Sbjct: 287 EVMCMEDEVQSIQPNHERPSSGPELEHGLENGAKEMLDDKEEQEKDRDNENQGEEDPTWF 346
Query: 141 EGESQFLLDSQQLAENLAICDEFLQSQSQTSCGGGDDETDKIKPRLAVYAQLPVEDLKKD 200
+ SQF+L+SQQL E L++CD+ L SQ + DK +P +A YA L ED K+D
Sbjct: 347 DSGSQFILNSQQLVEALSLCDDLLGSQDREENTNSGSLKDK-QPCIADYAHLGPEDFKRD 405
Query: 201 LEECQR--LDPSDGTNLELENASEFRLSQIEF-SQDSFTTAWAGGKV 244
LEECQ+ LDPS N+EL+ EFRLSQ+EF SQDSF AW GK
Sbjct: 406 LEECQKIVLDPS---NIELDTPPEFRLSQLEFGSQDSF-LAWGTGKT 448
>AT5G14490.1 | chr5:4670779-4672072 REVERSE LENGTH=351
Length = 350
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/45 (68%), Positives = 37/45 (82%), Gaps = 1/45 (2%)
Query: 1 MVLYMSTMKGGKPEKTNWVMHQYHLGTGEDEVEGQYVVSKLLFQQ 45
MVLY S KG KPEK+NWV+HQYHLGT E E+ G+YVVSK+ +QQ
Sbjct: 175 MVLYKSARKGFKPEKSNWVLHQYHLGTEEGEI-GEYVVSKITYQQ 218
>AT4G29230.1 | chr4:14410338-14414956 FORWARD LENGTH=499
Length = 498
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 42/60 (70%), Gaps = 2/60 (3%)
Query: 1 MVLYMSTMKGGKPEKTNWVMHQYHLGTGEDEVEGQYVVSKLLFQQQFKPGEKNAQDLTSA 60
+VLY + K KPEKTNWVMHQYHLGT E+E EG+ VVSK+ +Q Q P + N TS+
Sbjct: 172 LVLYTNFGKNRKPEKTNWVMHQYHLGTHEEEKEGELVVSKIFYQTQ--PRQCNWSSSTSS 229
>AT3G01600.1 | chr3:229365-231105 FORWARD LENGTH=371
Length = 370
Score = 67.0 bits (162), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 31/46 (67%), Positives = 36/46 (78%), Gaps = 1/46 (2%)
Query: 1 MVLYMSTMKGGKPEKTNWVMHQYHLGTGEDEVEGQYVVSKLLFQQQ 46
MVLY S KG KPEK+NWV+HQYHLGT E+ G YVVSK+ +QQQ
Sbjct: 172 MVLYKSARKGTKPEKSNWVLHQYHLGTEGKEI-GDYVVSKITYQQQ 216
>AT4G28500.1 | chr4:14083014-14084266 FORWARD LENGTH=306
Length = 305
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/46 (65%), Positives = 36/46 (78%)
Query: 1 MVLYMSTMKGGKPEKTNWVMHQYHLGTGEDEVEGQYVVSKLLFQQQ 46
+VLY + K KPEKTNWVMHQYHLGT E+E EG+ VVSK+ +Q Q
Sbjct: 176 LVLYTNYGKQKKPEKTNWVMHQYHLGTSEEEKEGELVVSKVFYQTQ 221
>AT5G56620.1 | chr5:22918521-22921139 REVERSE LENGTH=387
Length = 386
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 45/79 (56%), Gaps = 11/79 (13%)
Query: 1 MVLYMSTMKGGKPEKTNWVMHQYHLGTGEDEVEGQYVVSKLLFQQQFK-----------P 49
+VLY + K +PEKTNWVMHQYHLG E+E EG+ VVSK+ +Q Q +
Sbjct: 170 LVLYTNFGKNRRPEKTNWVMHQYHLGINEEEREGELVVSKIFYQTQPRQCVSNTNWSDHH 229
Query: 50 GEKNAQDLTSADALESIVA 68
G K+ + D + S+ A
Sbjct: 230 GSKDVIGIGVGDEISSVAA 248
>AT1G28470.1 | chr1:10010259-10011867 FORWARD LENGTH=315
Length = 314
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 36/46 (78%)
Query: 1 MVLYMSTMKGGKPEKTNWVMHQYHLGTGEDEVEGQYVVSKLLFQQQ 46
+VLY + + KPEKTNWVMHQYHLG+ EDE +G+ V+SK+ +Q Q
Sbjct: 193 LVLYTNYGRQKKPEKTNWVMHQYHLGSSEDEKDGEPVLSKVFYQTQ 238
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.308 0.128 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,835,474
Number of extensions: 251130
Number of successful extensions: 905
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 901
Number of HSP's successfully gapped: 7
Length of query: 246
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 150
Effective length of database: 8,474,633
Effective search space: 1271194950
Effective search space used: 1271194950
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 110 (47.0 bits)