Os08g0157900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to NAM protein.
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Os08g0157900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to NAM protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16.26 | 0.189 | 12 | 0.537 | 0.046 | 0.663 | 0.678 | -0.466 | 0.152 | 0.308 | 28.99 | 35 | -- | -- |
| 16.47 | 0.189 | 12 | 0.461 | 0.0453 | 0.691 | 0.561 | -- | 0.138 | 23.8 | 28.76 | 55 | -- | -- |
| 17.77 | 0.196 | 12 | 0.408 | 0.0334 | 0.681 | -- | 0.123 | 0.121 | 23.7 | 28.92 | 24 | -- | -- |
| 17.7 | 0.196 | 12 | 0.441 | 0.0459 | 0.694 | -- | -- | 0.132 | 22.6 | 28.97 | 56 | -- | -- |
| 17.78 | 0.196 | 12 | 0.429 | -- | 0.721 | -- | 0.128 | 0.135 | -- | 28.9 | 32 | -- | -- |
| 22.92 | 0.224 | 12 | 0.288 | 0.249 | -- | 0.598 | -- | -0.00706 | 1.61 | -- | -- | -- | -- |
| 24.31 | 0.231 | 12 | 0.268 | 0.252 | -- | -- | -- | -0.0109 | 1.98 | -- | -- | -- | -- |
| 17.8 | 0.197 | 12 | 0.445 | -- | 0.716 | -- | -- | 0.137 | -- | 29 | 34 | -- | -- |
| 22.38 | 0.222 | 12 | -- | 0.0941 | 0.495 | -- | -- | 0.0466 | 1.85 | 28.97 | 56 | -- | -- |
| 28.12 | 0.248 | 12 | 0.279 | -- | -- | -- | -- | -0.00497 | -- | -- | -- | -- | -- |
| 26.21 | 0.239 | 12 | -- | 0.257 | -- | -- | -- | -0.0408 | 2.01 | -- | -- | -- | -- |
| 22.66 | 0.222 | 12 | -- | -- | 0.59 | -- | -- | 0.0651 | -- | 29.24 | 35 | -- | -- |
| 30.17 | 0.256 | 12 | -- | -- | -- | -- | -- | -0.0359 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 16.13 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 2 | 16.18 | temperature | 30 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 4 | 16.24 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 6 | 16.30 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 10 | 16.36 | temperature | 30 | 30 | < th | dose dependent | no | NA | NA |
| 12 | 16.38 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 17 | 16.41 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 20 | 16.43 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 29 | 16.49 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 35 | 16.54 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 6 |
| 42 | 16.58 | humidity | 90 | 14400 | > th | dose dependent | rect. | 20 | 8 |
| 50 | 16.61 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 11 |
| 51 | 16.61 | temperature | 15 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 59 | 16.63 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 23 |
| 60 | 16.63 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 69 | 16.69 | temperature | 15 | 30 | > th | dose dependent | no | NA | NA |
| 91 | 16.78 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 2 |
| 100 | 16.80 | humidity | 90 | 14400 | > th | dose dependent | sin | 12 | NA |
| 110 | 16.82 | temperature | 20 | 30 | > th | dose dependent | rect. | 11 | 23 |
| 118 | 16.83 | temperature | 30 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 166 | 16.97 | humidity | 90 | 14400 | > th | dose independent | rect. | 20 | 8 |
| 220 | 17.07 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 20 |
| 223 | 17.07 | temperature | 15 | 270 | > th | dose dependent | rect. | 20 | 23 |
| 232 | 17.08 | temperature | 20 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 233 | 17.08 | temperature | 15 | 10 | > th | dose dependent | rect. | 24 | 23 |
| 272 | 17.15 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 4 |
| 299 | 17.17 | temperature | 20 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 348 | 17.23 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 423 | 17.31 | humidity | 90 | 14400 | < th | dose independent | rect. | 18 | 10 |
| 458 | 17.33 | temperature | 20 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 486 | 17.35 | temperature | 20 | 270 | > th | dose dependent | rect. | 13 | 23 |
| 488 | 17.36 | humidity | 90 | 14400 | > th | dose independent | sin | 12 | NA |
| 560 | 17.41 | temperature | 20 | 1440 | > th | dose dependent | sin | 14 | NA |
| 583 | 17.42 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 23 |
| 588 | 17.43 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 623 | 17.44 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 19 |
| 661 | 17.45 | temperature | 20 | 90 | > th | dose dependent | rect. | 11 | 20 |
| 680 | 17.46 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 17 |
| 737 | 17.48 | temperature | 30 | 1440 | < th | dose dependent | rect. | 19 | 12 |
| 776 | 17.49 | temperature | 30 | 1440 | < th | dose dependent | rect. | 19 | 10 |
| 886 | 17.51 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 19 |
| 914 | 17.52 | temperature | 25 | 4320 | < th | dose independent | rect. | 11 | 2 |
| 918 | 17.52 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 941 | 17.52 | temperature | 20 | 1440 | > th | dose dependent | rect. | 8 | 17 |