Os03g0815100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to OsNAC6 protein.
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Os03g0815100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to OsNAC6 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 269.1 | 0.771 | 12.7 | 0.0278 | 1.38 | 3 | 2.85 | 2.31 | -0.192 | 15.2 | 0.1686 | 719 | -- | -- |
| 273.2 | 0.77 | 12.7 | 0.11 | 1.44 | 2.95 | 1.78 | -- | -0.148 | 14.9 | 0.17 | 705 | -- | -- |
| 281.32 | 0.787 | 12.7 | -0.101 | 1.4 | -0.263 | -- | -1.62 | -0.264 | 7.17 | 0.1686 | 719 | -- | -- |
| 283.45 | 0.784 | 12.7 | 0.189 | 1.37 | 2.98 | -- | -- | -0.145 | 15.2 | 0.17 | 721 | -- | -- |
| 305.28 | 0.814 | 12.6 | -0.0115 | -- | 2.33 | -- | -2.26 | -0.222 | -- | 0.6101 | 954 | -- | -- |
| 292.61 | 0.802 | 12.7 | -0.172 | 1.53 | -- | 1.71 | -- | -0.26 | 8.14 | -- | -- | -- | -- |
| 300.73 | 0.812 | 12.7 | -0.128 | 1.54 | -- | -- | -- | -0.264 | 7.86 | -- | -- | -- | -- |
| 283.3 | 0.784 | 12.7 | 0.19 | -- | 2.52 | -- | -- | -0.114 | -- | 0.17 | 967 | -- | -- |
| 284.29 | 0.785 | 12.7 | -- | 1.33 | 2.95 | -- | -- | -0.162 | 15.2 | 0.17 | 721 | -- | -- |
| 430.13 | 0.969 | 12.7 | -0.111 | -- | -- | -- | -- | -0.243 | -- | -- | -- | -- | -- |
| 301.17 | 0.812 | 12.7 | -- | 1.54 | -- | -- | -- | -0.25 | 7.87 | -- | -- | -- | -- |
| 284.13 | 0.785 | 12.7 | -- | -- | 2.5 | -- | -- | -0.148 | -- | 0.17 | 971 | -- | -- |
| 430.45 | 0.968 | 12.7 | -- | -- | -- | -- | -- | -0.231 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 261.62 | radiation | 1 | 720 | < th | dose dependent | rect. | 6 | 19 |
| 3 | 261.91 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 18 |
| 14 | 263.88 | humidity | 70 | 270 | > th | dose independent | sin | 12 | NA |
| 16 | 264.29 | humidity | 80 | 720 | < th | dose independent | rect. | 8 | 10 |
| 20 | 264.58 | radiation | 10 | 720 | < th | dose dependent | rect. | 14 | 11 |
| 25 | 264.70 | humidity | 60 | 270 | > th | dose dependent | sin | 14 | NA |
| 27 | 264.77 | humidity | 80 | 10 | > th | dose independent | rect. | 18 | 2 |
| 35 | 265.17 | radiation | 1 | 720 | < th | dose dependent | rect. | 4 | 22 |
| 43 | 265.34 | radiation | 1 | 720 | > th | dose independent | rect. | 7 | 22 |
| 44 | 265.36 | radiation | 1 | 720 | > th | dose independent | rect. | 7 | 12 |
| 61 | 265.66 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 12 |
| 67 | 265.80 | radiation | 1 | 720 | < th | dose independent | rect. | 12 | 13 |
| 68 | 265.80 | radiation | 10 | 720 | < th | dose dependent | rect. | 14 | 9 |
| 72 | 265.97 | humidity | 70 | 720 | > th | dose independent | rect. | 14 | 17 |
| 80 | 266.19 | radiation | 1 | 720 | < th | dose independent | sin | 20 | NA |
| 81 | 266.20 | humidity | 90 | 90 | < th | dose independent | rect. | 8 | 14 |
| 82 | 266.20 | radiation | 10 | 720 | < th | dose dependent | sin | 19 | NA |
| 87 | 266.23 | temperature | 10 | 720 | > th | dose dependent | rect. | 9 | 10 |
| 98 | 266.31 | humidity | 50 | 720 | > th | dose dependent | rect. | 14 | 17 |
| 103 | 266.37 | humidity | 70 | 270 | < th | dose independent | rect. | 18 | 13 |
| 106 | 266.41 | humidity | 80 | 10 | > th | dose dependent | rect. | 18 | 2 |
| 110 | 266.50 | radiation | 10 | 720 | < th | dose dependent | rect. | 10 | 13 |
| 126 | 266.72 | humidity | 60 | 270 | > th | dose dependent | rect. | 14 | 13 |
| 127 | 266.74 | humidity | 70 | 720 | > th | dose independent | rect. | 13 | 13 |
| 129 | 266.74 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 14 |
| 139 | 266.88 | humidity | 70 | 270 | < th | dose independent | rect. | 18 | 2 |
| 164 | 266.99 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 16 |
| 168 | 267.09 | radiation | 1 | 720 | > th | dose independent | sin | 18 | NA |
| 169 | 267.10 | humidity | 80 | 720 | < th | dose independent | sin | 0 | NA |
| 178 | 267.15 | humidity | 80 | 270 | < th | dose dependent | rect. | 18 | 2 |
| 181 | 267.19 | humidity | 70 | 720 | > th | dose independent | rect. | 14 | 9 |
| 200 | 267.32 | humidity | 80 | 720 | > th | dose independent | rect. | 9 | 17 |
| 226 | 267.51 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 4 |
| 235 | 267.61 | temperature | 25 | 30 | < th | dose independent | rect. | 18 | 2 |
| 247 | 267.70 | radiation | 1 | 720 | < th | dose independent | rect. | 4 | 22 |
| 280 | 267.92 | humidity | 70 | 720 | > th | dose independent | sin | 15 | NA |
| 284 | 267.94 | temperature | 10 | 720 | > th | dose dependent | sin | 0 | NA |
| 315 | 268.06 | humidity | 80 | 720 | < th | dose independent | rect. | 4 | 14 |
| 320 | 268.08 | radiation | 1 | 720 | < th | dose independent | rect. | 6 | 23 |
| 351 | 268.30 | radiation | 1 | 720 | > th | dose independent | rect. | 7 | 8 |
| 360 | 268.32 | humidity | 50 | 720 | > th | dose dependent | rect. | 14 | 9 |
| 364 | 268.34 | radiation | 1 | 720 | > th | dose independent | rect. | 10 | 9 |
| 422 | 268.50 | radiation | 10 | 720 | < th | dose dependent | rect. | 14 | 3 |
| 433 | 268.55 | humidity | 50 | 720 | > th | dose dependent | rect. | 14 | 7 |
| 448 | 268.60 | humidity | 80 | 270 | < th | dose dependent | rect. | 17 | 13 |
| 477 | 268.72 | temperature | 25 | 270 | > th | dose dependent | rect. | 16 | 19 |
| 481 | 268.74 | radiation | 20 | 720 | < th | dose dependent | rect. | 14 | 1 |
| 495 | 268.83 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 6 |
| 505 | 268.86 | temperature | 25 | 30 | < th | dose independent | rect. | 16 | 5 |
| 520 | 268.88 | temperature | 25 | 270 | > th | dose dependent | rect. | 18 | 1 |
| 530 | 268.96 | radiation | 1 | 720 | < th | dose dependent | rect. | 19 | 23 |
| 533 | 268.97 | radiation | 10 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 548 | 269.01 | humidity | 90 | 10 | < th | dose independent | rect. | 8 | 14 |
| 592 | 269.15 | radiation | 1 | 720 | > th | dose independent | rect. | 16 | 23 |
| 594 | 269.16 | humidity | 80 | 720 | < th | dose independent | rect. | 22 | 20 |
| 682 | 269.46 | humidity | 90 | 270 | < th | dose independent | sin | 20 | NA |
| 719 | 269.55 | wind | 1 | 720 | > th | dose independent | rect. | 2 | 17 |
| 736 | 269.63 | radiation | 10 | 720 | < th | dose independent | rect. | 14 | 1 |
| 769 | 269.71 | wind | 1 | 720 | > th | dose independent | rect. | 7 | 12 |
| 797 | 269.79 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 16 |
| 858 | 269.97 | radiation | 1 | 720 | < th | dose dependent | rect. | 21 | 23 |
| 863 | 269.98 | radiation | 1 | 720 | < th | dose dependent | rect. | 22 | 20 |
| 865 | 269.99 | humidity | 50 | 720 | > th | dose dependent | rect. | 14 | 4 |
| 913 | 270.13 | humidity | 80 | 720 | > th | dose independent | rect. | 15 | 2 |
| 947 | 270.24 | wind | 1 | 720 | > th | dose independent | rect. | 5 | 14 |
| 953 | 270.25 | radiation | 1 | 720 | < th | dose dependent | no | NA | NA |
| 986 | 270.29 | radiation | 1 | 720 | < th | dose dependent | rect. | 12 | 23 |