BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0472700 Os05g0472700|AK070864
(353 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0472700 Similar to Metal transport protein 651 0.0
Os07g0232800 Similar to Zinc transporter protein ZIP1 369 e-102
Os04g0613000 Similar to Zinc transporter ZIP1 (Fragment) 335 4e-92
Os08g0207500 Similar to Zinc transporter ZIP1 (Fragment) 295 4e-80
Os03g0667500 Similar to Metal transport protein 292 2e-79
Os03g0667300 Similar to Metal transport protein 291 5e-79
Os05g0198400 Similar to Zinc transporter 4, chloroplast pre... 245 3e-65
Os05g0164800 Similar to Zinc transporter 6, chloroplast pre... 194 8e-50
Os01g0577000 96 5e-20
Os06g0566300 Similar to Zinc transporter 4, chloroplast pre... 76 5e-14
Os05g0472400 Zinc/iron permease family protein 68 1e-11
>Os05g0472700 Similar to Metal transport protein
Length = 353
Score = 651 bits (1679), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/353 (94%), Positives = 332/353 (94%)
Query: 1 MATAAMTKVFVLLFLVXXXXXXXXXXXXXXXXXXXXXGRDKAQALRLKVIAIFCILAGST 60
MATAAMTKVFVLLFLV GRDKAQALRLKVIAIFCILAGST
Sbjct: 1 MATAAMTKVFVLLFLVAACYLPAHAAAAECDCATDTAGRDKAQALRLKVIAIFCILAGST 60
Query: 61 VGAALPSLGGRFPAIQPETDVFLSVKAFAGGVILATGLVHILPAAFEALSSPCLVGGPWK 120
VGAALPSLGGRFPAIQPETDVFLSVKAFAGGVILATGLVHILPAAFEALSSPCLVGGPWK
Sbjct: 61 VGAALPSLGGRFPAIQPETDVFLSVKAFAGGVILATGLVHILPAAFEALSSPCLVGGPWK 120
Query: 121 RFPFAGMVAMVSAIGTLIVDTVATGYFHRTDAKRKAAAVADEPADDLEASDEHSHGHAHG 180
RFPFAGMVAMVSAIGTLIVDTVATGYFHRTDAKRKAAAVADEPADDLEASDEHSHGHAHG
Sbjct: 121 RFPFAGMVAMVSAIGTLIVDTVATGYFHRTDAKRKAAAVADEPADDLEASDEHSHGHAHG 180
Query: 181 MSVMSVAPAGEEDLVRHRVISQVLELGVVVHSLIIGMSLGASDFPSTVRPLVPALTFHQF 240
MSVMSVAPAGEEDLVRHRVISQVLELGVVVHSLIIGMSLGASDFPSTVRPLVPALTFHQF
Sbjct: 181 MSVMSVAPAGEEDLVRHRVISQVLELGVVVHSLIIGMSLGASDFPSTVRPLVPALTFHQF 240
Query: 241 FEGIGLGGCIVQAKFRVRSVVTMALFFSLTTPAGIVVGIGISSVYDANSPTALVVQGLLE 300
FEGIGLGGCIVQAKFRVRSVVTMALFFSLTTPAGIVVGIGISSVYDANSPTALVVQGLLE
Sbjct: 241 FEGIGLGGCIVQAKFRVRSVVTMALFFSLTTPAGIVVGIGISSVYDANSPTALVVQGLLE 300
Query: 301 AAAAGILVYMALVDILAEDFMKTKVQRRGRLQLAMNVALLLGAGLMSMIAIWA 353
AAAAGILVYMALVDILAEDFMKTKVQRRGRLQLAMNVALLLGAGLMSMIAIWA
Sbjct: 301 AAAAGILVYMALVDILAEDFMKTKVQRRGRLQLAMNVALLLGAGLMSMIAIWA 353
>Os07g0232800 Similar to Zinc transporter protein ZIP1
Length = 357
Score = 369 bits (947), Expect = e-102, Method: Compositional matrix adjust.
Identities = 194/309 (62%), Positives = 234/309 (75%), Gaps = 2/309 (0%)
Query: 47 LKVIAIFCILAGSTVGAALPSLGGRFPAIQPETDVFLSVKAFAGGVILATGLVHILPAAF 106
LK+ A F IL +G LPSLG PA++P+ DVF VKAFA GVILATG +HILP AF
Sbjct: 49 LKIAAFFSILVCGALGCGLPSLGRHVPALRPDGDVFFLVKAFAAGVILATGFIHILPDAF 108
Query: 107 EALSSPCL-VGGPWKRFPFAGMVAMVSAIGTLIVDTVATGYFHRTDAKRKAA-AVADEPA 164
+ L+ CL GGPWK FPFAG AMV AIGTL+VDT+ATGYF R +K+ AA A A E
Sbjct: 109 DNLTDDCLPAGGPWKEFPFAGFGAMVGAIGTLVVDTLATGYFTRALSKKDAATAAAHEGQ 168
Query: 165 DDLEASDEHSHGHAHGMSVMSVAPAGEEDLVRHRVISQVLELGVVVHSLIIGMSLGASDF 224
+ H H H V +V +E +RHRVISQVLELG+VVHS+IIG+SLGAS
Sbjct: 169 VHVHTHATHGHAHGSSALVAAVGEDDKETTLRHRVISQVLELGIVVHSVIIGISLGASQN 228
Query: 225 PSTVRPLVPALTFHQFFEGIGLGGCIVQAKFRVRSVVTMALFFSLTTPAGIVVGIGISSV 284
P T++PLV AL+FHQ FEG+GLGGCIVQAKF+VRS+VTM LFF LTTP GI VG+GISSV
Sbjct: 229 PETIKPLVVALSFHQMFEGMGLGGCIVQAKFKVRSIVTMVLFFCLTTPVGIAVGVGISSV 288
Query: 285 YDANSPTALVVQGLLEAAAAGILVYMALVDILAEDFMKTKVQRRGRLQLAMNVALLLGAG 344
Y+ +SPTALVV+G+L + AAGIL+YMALVD+LAEDFM +VQ +G+LQL +N+A+L GAG
Sbjct: 289 YNESSPTALVVEGILNSVAAGILIYMALVDLLAEDFMNPRVQSKGKLQLGINLAMLAGAG 348
Query: 345 LMSMIAIWA 353
LMSM+A WA
Sbjct: 349 LMSMLAKWA 357
>Os04g0613000 Similar to Zinc transporter ZIP1 (Fragment)
Length = 364
Score = 335 bits (858), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 178/338 (52%), Positives = 239/338 (70%), Gaps = 29/338 (8%)
Query: 38 GRDKAQALRLKVIAIFCILAGSTVGAALPSLGGRFPAIQPETDVFLSVKAFAGGVILATG 97
G D+ A++LK+IAI ILA G +P +G A++P+ D+F +VKAFA GVILATG
Sbjct: 34 GADRQGAMKLKLIAIASILAAGAAGVLVPVIGRSMAALRPDGDIFFAVKAFAAGVILATG 93
Query: 98 LVHILPAAFEALSSPCLV--GGPWKRFPFAGMVAMVSAIGTLIVDTVATGYFHRTDAKRK 155
+VHILPAAF+AL+SPCL GG FPFAG+V+M +A+ T++VD++A GY+HR+ ++
Sbjct: 94 MVHILPAAFDALTSPCLKRGGGDRNPFPFAGLVSMSAAVSTMVVDSLAAGYYHRSQFRKA 153
Query: 156 AAAVADEPADDLE----ASDEHSHGHAHGMSVMS------------VAPAGEE----DLV 195
P D++ A DE + HA ++ + V + EE + +
Sbjct: 154 ------RPVDNINVHKHAGDERAE-HAQHINAHTHGGHTHSHGDIVVCGSPEEGSVAESI 206
Query: 196 RHRVISQVLELGVVVHSLIIGMSLGASDFPSTVRPLVPALTFHQFFEGIGLGGCIVQAKF 255
RH+V+SQVLELG++VHS+IIG+SLGAS PST+RPLV AL+FHQFFEG+GLGGCIVQA F
Sbjct: 207 RHKVVSQVLELGILVHSVIIGVSLGASVRPSTIRPLVGALSFHQFFEGVGLGGCIVQANF 266
Query: 256 RVRSVVTMALFFSLTTPAGIVVGIGISSVYDANSPTALVVQGLLEAAAAGILVYMALVDI 315
+VR+ V MA+FFSLT P GIV+GI ISS Y+ +S TA VV+G+ +A+AGIL+YM+LVD+
Sbjct: 267 KVRATVIMAIFFSLTAPVGIVLGIAISSSYNVHSSTAFVVEGVFNSASAGILIYMSLVDL 326
Query: 316 LAEDFMKTKVQRRGRLQLAMNVALLLGAGLMSMIAIWA 353
LA DF K+Q +LQL +AL LGAGLMSM+AIWA
Sbjct: 327 LATDFNNPKLQINTKLQLMAYLALFLGAGLMSMLAIWA 364
>Os08g0207500 Similar to Zinc transporter ZIP1 (Fragment)
Length = 396
Score = 295 bits (754), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 179/348 (51%), Positives = 227/348 (65%), Gaps = 32/348 (9%)
Query: 38 GRDKAQALRLKVIAIFCILAGSTVGAALPSLGGRFPAIQPETDVFLSVKAFAGGVILATG 97
G D ALRLK++AI ILA G +P LG F A++P+ DVF +VKAFA GVILATG
Sbjct: 49 GEDARGALRLKLVAIASILAAGAAGVLVPVLGRSFAALRPDGDVFFAVKAFAAGVILATG 108
Query: 98 LVHILPAAFEALSSPCLVGGPWKR-FPFAGMVAMVSAIGTLIVDTVATGYFHRTDAKRKA 156
+VHILPAAF+AL+SPC G FPFAG+VAM +A+ T+++D+VA GY+ R+ K+
Sbjct: 109 MVHILPAAFDALASPCGGGRGGGGGFPFAGLVAMAAAMATMMIDSVAAGYYRRSHFKKPR 168
Query: 157 AAVADEPADDLEASDEHSHGHA-----------------------HGMSVMSVAPAG--- 190
A +E HA APA
Sbjct: 169 PVDDPADAARAAGVEEGGAEHAGHVHVHTHATHGHAHGHVHSHGHGHGHSHGSAPAAATS 228
Query: 191 EED-----LVRHRVISQVLELGVVVHSLIIGMSLGASDFPSTVRPLVPALTFHQFFEGIG 245
ED +RHRV+SQVLELG++VHS+IIG+SLGAS PS++RPLV AL+FHQFFEGIG
Sbjct: 229 PEDASVAETIRHRVVSQVLELGILVHSVIIGVSLGASLRPSSIRPLVGALSFHQFFEGIG 288
Query: 246 LGGCIVQAKFRVRSVVTMALFFSLTTPAGIVVGIGISSVYDANSPTALVVQGLLEAAAAG 305
LGGCIVQA F+ ++ V MA FFSLT P GI +GI ISS Y +S TALVV+G+ +AAAG
Sbjct: 289 LGGCIVQANFKAKATVIMATFFSLTAPVGIALGIAISSSYSKHSSTALVVEGVFNSAAAG 348
Query: 306 ILVYMALVDILAEDFMKTKVQRRGRLQLAMNVALLLGAGLMSMIAIWA 353
IL+YM+LVD+LA DF K+Q +LQLA+ +AL LGAG+MS++AIWA
Sbjct: 349 ILIYMSLVDLLAADFNNPKLQTNTKLQLAVYLALFLGAGMMSLLAIWA 396
>Os03g0667500 Similar to Metal transport protein
Length = 374
Score = 292 bits (748), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 161/323 (49%), Positives = 215/323 (66%), Gaps = 11/323 (3%)
Query: 40 DKAQALRLKVIAIFCILAGSTVGAALPSLGGRFPAIQPETDVFLSVKAFAGGVILATGLV 99
D +ALRLK+IAI IL S VG LP L PA++P+ +F VKAFA GVILATG +
Sbjct: 54 DVPRALRLKLIAIPTILVSSVVGVCLPLLSRSVPALRPDGGLFAVVKAFASGVILATGYM 113
Query: 100 HILPAAFEALSSPCLVGGPWKRFPFAGMVAMVSAIGTLIVDTVATGYFHRTDAKRKAAAV 159
H+LP AF L+SPCL PW FPFA VAM++A+ TL+ D++ Y++R+ + +
Sbjct: 114 HVLPDAFNNLTSPCLPRKPWSEFPFAAFVAMLAAVSTLMADSLMLTYYNRSKPRPSSGGD 173
Query: 160 ADEPADDLEASDEHSHGHAHGMSVMSVAPAGEED-------LVRHRVISQVLELGVVVHS 212
AD E+ D+ +A A +D L R+RV+ QVLE+G+VVHS
Sbjct: 174 VAAVADHGESPDQGHRHGHGHGHGHGMAVAKPDDVEATQVQLRRNRVVVQVLEIGIVVHS 233
Query: 213 LIIGMSLGASDFPSTVRPLVPALTFHQFFEGIGLGGCIVQAKF--RVRSVVTMALFFSLT 270
++IG+ +GAS T+RPLV A+ FHQ FEG+GLGGCI+QA++ R+RSV + FFS T
Sbjct: 234 VVIGLGMGASQNVCTIRPLVAAMCFHQMFEGMGLGGCILQAEYGRRMRSV--LVFFFSTT 291
Query: 271 TPAGIVVGIGISSVYDANSPTALVVQGLLEAAAAGILVYMALVDILAEDFMKTKVQRRGR 330
TP GI +G+ ++ VY NSPTAL+V GLL AA+AG+L YMALV++LA DFM K+Q R
Sbjct: 292 TPFGIALGLALTRVYRDNSPTALIVVGLLNAASAGLLHYMALVELLAADFMGPKLQGNVR 351
Query: 331 LQLAMNVALLLGAGLMSMIAIWA 353
LQLA +A+LLGAG MS++A WA
Sbjct: 352 LQLAAFLAVLLGAGGMSVMAKWA 374
>Os03g0667300 Similar to Metal transport protein
Length = 370
Score = 291 bits (745), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 163/330 (49%), Positives = 213/330 (64%), Gaps = 26/330 (7%)
Query: 42 AQALRLKVIAIFCILAGSTVGAALPSLGGRFPAIQPETDVFLSVKAFAGGVILATGLVHI 101
A+ALRLK+IAI ILA S G LP PA++P+ +F VKAFA GVIL TG +H+
Sbjct: 49 ARALRLKLIAIPAILAASVAGVCLPLFARSVPALRPDGGLFAVVKAFASGVILGTGYMHV 108
Query: 102 LPAAFEALSSPCLVGGPWKRFPFAGMVAMVSAIGTLIVDTVATGYFHRTDAKRKAAAVAD 161
LP +F L+SPCL PW FPFA VAM++A+ TL+VD++ + R R ++AVA
Sbjct: 109 LPDSFNDLTSPCLPRKPWSEFPFAAFVAMLAAVFTLMVDSLMLTFHTRGSKGRASSAVAH 168
Query: 162 EPADDLEASDEHSHGHAHGM--------SVMSVAPAGEED----------LVRHRVISQV 203
+H H HAH + S A G D L+R+RVI QV
Sbjct: 169 H--------GDHGHCHAHALGQADVAALSTTEAADQGSGDVEAGNTTKAQLLRNRVIVQV 220
Query: 204 LELGVVVHSLIIGMSLGASDFPSTVRPLVPALTFHQFFEGIGLGGCIVQAKFRVRSVVTM 263
LE+G+VVHS++IG+ +GAS T+RPLV AL FHQ FEG+GLGGCI+QA + R+ +
Sbjct: 221 LEMGIVVHSVVIGLGMGASQNVCTIRPLVAALCFHQMFEGMGLGGCILQAGYGGRTRSAL 280
Query: 264 ALFFSLTTPAGIVVGIGISSVYDANSPTALVVQGLLEAAAAGILVYMALVDILAEDFMKT 323
FFS TTP GI +G+ ++ VY +SPTALVV GLL AA+AG+L YMALV++LA DFM
Sbjct: 281 VFFFSTTTPFGIALGLALTRVYSDSSPTALVVVGLLNAASAGLLHYMALVELLAADFMGP 340
Query: 324 KVQRRGRLQLAMNVALLLGAGLMSMIAIWA 353
K+Q RLQLA ++A+LLGAG MS++A WA
Sbjct: 341 KLQGNVRLQLAASLAILLGAGGMSVMAKWA 370
>Os05g0198400 Similar to Zinc transporter 4, chloroplast precursor (ZRT/IRT-like
protein 4)
Length = 384
Score = 245 bits (626), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 156/348 (44%), Positives = 212/348 (60%), Gaps = 33/348 (9%)
Query: 39 RDKAQALRLKVIAIFCILAGSTVGAALPSLGGRFPAIQPETDVFLSVKAFAGGVILATGL 98
RD A ALRLK +A+ IL VG LP G + A++ ++ F++ KAFA GVILATG
Sbjct: 37 RDDAAALRLKGVAMATILVAGVVGVGLPLAGRKRRALRTDSAAFVAAKAFAAGVILATGF 96
Query: 99 VHILPAAFEALSSPCLVGGPWKRFPFAGMVAMVSAIGTLIVDTVATGYF---HRTDAKR- 154
VH+L A ALSSPCL PW+ FPF G VAM +A+ TL++D +AT ++ HR + +R
Sbjct: 97 VHMLHDAEHALSSPCLPAHPWRSFPFPGFVAMSAALATLVLDFLATRFYEGKHRAETERV 156
Query: 155 ------------------KAAAVADEPADD----LEASDEHSHGHAHGMSVMSVA----P 188
V ++ D+ L+ +A
Sbjct: 157 KAAAAAALAASSASDDDITVVTVTEDDNDNKAPLLQPHSHSHSHPHGHGHGHELAQPEGS 216
Query: 189 AGEEDL---VRHRVISQVLELGVVVHSLIIGMSLGASDFPSTVRPLVPALTFHQFFEGIG 245
GE ++ VR V+SQ+LE+G+V HS+IIG+SLG S P T+RPLV AL+FHQFFEG
Sbjct: 217 GGEGEVPAQVRSVVVSQILEMGIVSHSVIIGLSLGVSRSPCTIRPLVAALSFHQFFEGFA 276
Query: 246 LGGCIVQAKFRVRSVVTMALFFSLTTPAGIVVGIGISSVYDANSPTALVVQGLLEAAAAG 305
LGGCI QA+F+ S MA FF++TTPAGI G G++S Y+ANSP ALVV+G+L++ +AG
Sbjct: 277 LGGCIAQAQFKTLSAAIMACFFAITTPAGIAAGAGVASFYNANSPRALVVEGILDSVSAG 336
Query: 306 ILVYMALVDILAEDFMKTKVQRRGRLQLAMNVALLLGAGLMSMIAIWA 353
IL+YM+LVD++A DF+ K+ R Q+ +AL LGA MS +AIWA
Sbjct: 337 ILIYMSLVDLIAADFLGGKMTGSTRQQVMAYIALFLGALSMSSLAIWA 384
>Os05g0164800 Similar to Zinc transporter 6, chloroplast precursor (ZRT/IRT-like
protein 6)
Length = 395
Score = 194 bits (493), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 145/377 (38%), Positives = 204/377 (54%), Gaps = 63/377 (16%)
Query: 39 RDKAQALRLKVIAIFCILAGSTVGAALP-SLGGRFPAIQPETDVFLSVKAFAGGVILATG 97
RD A A RLK ++ IL S VG LP +L G F L VK +A GVIL+T
Sbjct: 20 RDGAAAARLKTGSLLAILVASAVGICLPVALTGAFRGKAGYARGLLLVKCYAAGVILSTS 79
Query: 98 LVHILPAAFEALSSPCLVGG--PWKRFPFAGMVAMVSAIGTLIVDTVATGYF----HRTD 151
LVH+LP A AL+ C V PW+ FPFAG+ ++V A+ L+VD A+ + H
Sbjct: 80 LVHVLPDAHAALAD-CAVATRRPWRDFPFAGLFSLVGALLALLVDLSASSHLEAHGHHQH 138
Query: 152 AK-----------------------------------RKAAAVADEPADDLE-------- 168
A+ +K A D DD+
Sbjct: 139 AEEGESPPPPPPTHQPYAPIPTTKKSPVFELSGEMSPKKRAHSDDTDRDDVALFGAKSAV 198
Query: 169 ASDE-------HSHGHAHGMSVMSVAPAGEEDLVR--HRVISQVLELGVVVHSLIIGMSL 219
SDE HGH + V GEE+ R +++S+VLE+G+V HS+IIG+++
Sbjct: 199 RSDEVVVAPRVGCHGHHDVVEVGEEGGGGEEEEARRKQKMVSKVLEIGIVFHSVIIGVTM 258
Query: 220 GASDFPSTVRPLVPALTFHQFFEGIGLGGCIVQAKFRVRSVVTMALFFSLTTPAGIVVGI 279
G S +RPLV AL+FHQ FEG+GLGGCI QA F + +V M + FS+TTP GI++G+
Sbjct: 259 GMSQDVCAIRPLVVALSFHQVFEGMGLGGCIAQAGFGIATVGYMCVMFSVTTPLGILLGM 318
Query: 280 GISSV--YDANSPTALVVQGLLEAAAAGILVYMALVDILAEDFMKTK-VQRRGRLQLAMN 336
I + YD +SP AL+++GLL + ++GILVYMALVD+++ DF K + +L+
Sbjct: 319 AIFHMTGYDDSSPNALIIEGLLGSLSSGILVYMALVDLISLDFFHNKMMSSSNKLKKVSY 378
Query: 337 VALLLGAGLMSMIAIWA 353
VAL+LG+ MS++A+WA
Sbjct: 379 VALVLGSASMSILALWA 395
>Os01g0577000
Length = 113
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 47/60 (78%), Positives = 50/60 (83%)
Query: 38 GRDKAQALRLKVIAIFCILAGSTVGAALPSLGGRFPAIQPETDVFLSVKAFAGGVILATG 97
GRDK QAL LKVI IFCIL G+ VGAALPSLGG FPAIQPE+DVF+ VK FA GVILA G
Sbjct: 2 GRDKVQALHLKVIIIFCILTGTAVGAALPSLGGMFPAIQPESDVFIYVKTFATGVILAAG 61
>Os06g0566300 Similar to Zinc transporter 4, chloroplast precursor (ZRT/IRT-like
protein 4)
Length = 69
Score = 75.9 bits (185), Expect = 5e-14, Method: Composition-based stats.
Identities = 34/54 (62%), Positives = 44/54 (81%)
Query: 199 VISQVLELGVVVHSLIIGMSLGASDFPSTVRPLVPALTFHQFFEGIGLGGCIVQ 252
+I ++LELG+V HS+IIG+SLG S P T++PLV AL+FHQFFEG LGGCI +
Sbjct: 5 IIYKILELGIVSHSVIIGLSLGVSQSPCTIKPLVAALSFHQFFEGFALGGCISE 58
>Os05g0472400 Zinc/iron permease family protein
Length = 103
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/55 (76%), Positives = 49/55 (89%)
Query: 198 RVISQVLELGVVVHSLIIGMSLGASDFPSTVRPLVPALTFHQFFEGIGLGGCIVQ 252
V +V ELG++VHS+IIG+SLGAS+ PST+RPLV ALTFHQFFEGIGLGGCIVQ
Sbjct: 4 HVWMKVFELGIIVHSIIIGISLGASESPSTIRPLVAALTFHQFFEGIGLGGCIVQ 58
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.325 0.138 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,448,567
Number of extensions: 425929
Number of successful extensions: 1758
Number of sequences better than 1.0e-10: 13
Number of HSP's gapped: 1727
Number of HSP's successfully gapped: 14
Length of query: 353
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 251
Effective length of database: 11,709,973
Effective search space: 2939203223
Effective search space used: 2939203223
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 156 (64.7 bits)