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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0472400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc/iron permease family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.16 (0.0392) R2 : 0.57
β1 : -1.94 (0.143) R2dD : 0.18 R2D : 0.00339
β2 : 1.19 (0.097) R2dC : 0.142 R2C : 0.0381
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.57 (0.0834) R2dN8 : 0.447 R2N8 : 0.247
σ : 0.735
deviance : 246.47
__
_____
C
peak time of C : 9
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
229.19 0.711 5.11 -1.75 1.19 -0.228 -0.855 -3.64 -1.51 9.13 996.3 2202 -- --
242.45 0.731 5.15 -1.93 1.19 -0.334 -0.894 -- -1.52 9.14 996.3 2202 -- --
231.58 0.709 5.11 -1.77 1.2 -0.227 -- -3.68 -1.51 9 997.3 2047 -- --
244.99 0.729 5.15 -1.99 1.19 -0.303 -- -- -1.54 9.04 995 3681 -- --
313.69 0.825 5.15 -1.78 -- -0.152 -- -3.58 -1.52 -- 997.6 2026 -- --
243.79 0.732 5.16 -1.91 1.18 -- -0.896 -- -1.57 9.17 -- -- -- --
246.47 0.735 5.16 -1.94 1.19 -- -- -- -1.57 9 -- -- -- --
325.58 0.84 5.19 -2.01 -- -0.35 -- -- -1.53 -- 992 4231 -- --
339.53 0.858 5.12 -- 1.19 0.573 -- -- -1.37 9.1 992.3 6924 -- --
327.61 0.846 5.19 -1.94 -- -- -- -- -1.56 -- -- -- -- --
345.92 0.87 5.11 -- 1.19 -- -- -- -1.35 9.13 -- -- -- --
360.17 0.884 5.09 -- -- 1.56 -- -- -1.08 -- 970.7 47520 -- --
427.3 0.965 5.14 -- -- -- -- -- -1.35 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 218.16 wind 1.0 720 > th dose independent rect. 24 1
2 219.72 wind 9.0 43200 < th dose independent rect. 18 1
3 220.79 wind 9.0 43200 > th dose dependent rect. 18 2
5 221.25 wind 3.0 14400 > th dose dependent rect. 14 1
6 221.28 precipitation 0.1 14400 > th dose dependent rect. 20 2
7 221.46 atmosphere 995.0 14400 > th dose independent rect. 8 5
8 221.64 wind 9.0 43200 > th dose independent rect. 18 1
10 221.80 wind 5.0 14400 > th dose independent rect. 14 1
11 221.82 temperature 10.0 270 > th dose dependent rect. 19 12
12 221.97 wind 5.0 14400 < th dose independent rect. 14 1
18 222.70 radiation 10.0 14400 < th dose independent rect. 13 1
19 222.70 atmosphere 1000.0 10 > th dose independent rect. 7 23
21 222.84 temperature 10.0 720 > th dose dependent rect. 19 5
23 223.15 radiation 20.0 14400 > th dose dependent rect. 6 2
38 223.23 radiation 1.0 4320 < th dose dependent rect. 2 3
46 223.61 wind 1.0 43200 > th dose independent rect. 2 6
50 223.84 temperature 10.0 720 > th dose dependent rect. 19 10
52 223.86 wind 1.0 43200 < th dose dependent rect. 2 6
55 223.94 atmosphere 995.0 14400 > th dose independent rect. 11 2
56 223.97 radiation 10.0 4320 < th dose dependent rect. 19 10
63 224.11 radiation 20.0 14400 < th dose independent rect. 5 3
64 224.14 wind 9.0 720 < th dose independent rect. 13 23
67 224.15 radiation 20.0 14400 < th dose independent rect. 18 14
68 224.15 wind 9.0 14400 < th dose dependent rect. 14 1
71 224.16 radiation 20.0 14400 < th dose independent rect. 23 9
77 224.18 temperature 10.0 720 > th dose dependent rect. 17 14
80 224.22 humidity 90.0 14400 > th dose dependent rect. 2 1
84 224.26 humidity 90.0 14400 > th dose independent rect. 1 6
91 224.40 wind 1.0 43200 > th dose independent rect. 4 3
92 224.42 precipitation 0.1 43200 > th dose dependent rect. 18 2
93 224.44 precipitation 0.1 14400 < th dose independent rect. 20 2
95 224.44 precipitation 0.1 14400 < th dose dependent rect. 20 2
97 224.46 precipitation 0.1 14400 > th dose independent rect. 20 2
101 224.53 wind 1.0 43200 < th dose independent rect. 2 6
108 224.62 humidity 90.0 14400 > th dose dependent rect. 1 7
112 224.66 temperature 10.0 720 > th dose dependent rect. 15 16
113 224.66 temperature 10.0 720 > th dose dependent rect. 12 19
127 224.92 atmosphere 1015.0 720 < th dose dependent rect. 24 1
128 224.93 atmosphere 1000.0 720 > th dose independent rect. 19 12
133 224.99 precipitation 0.1 14400 > th dose dependent rect. 2 6
138 225.06 precipitation 0.1 14400 < th dose independent rect. 2 6
139 225.06 precipitation 0.1 14400 < th dose dependent rect. 2 6
148 225.14 precipitation 0.1 43200 > th dose independent rect. 18 2
153 225.19 humidity 50.0 30 > th dose independent rect. 24 12
155 225.20 atmosphere 1015.0 720 < th dose dependent rect. 24 3
163 225.29 wind 9.0 720 < th dose independent rect. 23 20
164 225.30 precipitation 0.1 43200 < th dose independent rect. 18 2
165 225.30 precipitation 0.1 43200 < th dose dependent rect. 18 2
170 225.36 precipitation 0.1 14400 > th dose independent rect. 2 6
173 225.38 temperature 20.0 270 > th dose independent rect. 2 21
209 225.54 wind 1.0 43200 < th dose independent rect. 4 3
210 225.54 temperature 15.0 30 > th dose dependent rect. 21 10
211 225.54 atmosphere 1015.0 270 < th dose dependent rect. 23 13
213 225.56 humidity 90.0 43200 < th dose dependent rect. 10 2
220 225.63 wind 1.0 43200 < th dose dependent rect. 4 3
224 225.68 wind 1.0 43200 < th dose independent rect. 4 1
248 225.81 atmosphere 995.0 270 > th dose dependent rect. 3 13
256 225.87 temperature 10.0 720 > th dose dependent sin 12 NA
260 225.89 atmosphere 1000.0 1440 > th dose independent rect. 8 4
271 225.95 temperature 25.0 30 > th dose independent rect. 1 6
274 225.95 atmosphere 1000.0 1440 < th dose dependent rect. 5 7
276 225.98 atmosphere 1000.0 1440 < th dose independent rect. 7 5
279 226.00 humidity 90.0 14400 > th dose independent rect. 4 2
299 226.04 wind 9.0 720 < th dose independent rect. 7 12
307 226.08 atmosphere 1015.0 10 < th dose dependent rect. 24 12
312 226.10 wind 3.0 43200 < th dose dependent rect. 4 1
313 226.11 radiation 1.0 4320 < th dose independent rect. 19 10
326 226.15 atmosphere 995.0 720 > th dose dependent rect. 3 4
365 226.32 wind 1.0 43200 < th dose independent rect. 2 3
374 226.34 atmosphere 1000.0 1440 < th dose dependent rect. 8 1
420 226.47 humidity 90.0 43200 > th dose dependent rect. 8 1
448 226.59 temperature 10.0 270 > th dose dependent sin 9 NA
453 226.60 radiation 1.0 4320 < th dose dependent rect. 18 16
454 226.61 wind 9.0 720 < th dose independent rect. 7 23
455 226.62 radiation 1.0 4320 < th dose independent rect. 18 12
459 226.63 atmosphere 995.0 90 > th dose dependent rect. 5 13
477 226.69 radiation 20.0 14400 > th dose independent rect. 6 2
495 226.70 atmosphere 1005.0 4320 < th dose independent rect. 6 1
504 226.72 radiation 1.0 4320 < th dose dependent rect. 18 12
505 226.73 atmosphere 1005.0 4320 > th dose independent rect. 6 1
507 226.74 atmosphere 1000.0 720 > th dose independent rect. 12 1
527 226.78 atmosphere 1000.0 1440 < th dose dependent rect. 11 1
541 226.82 atmosphere 1000.0 720 > th dose independent rect. 4 3
553 226.86 temperature 30.0 10 < th dose independent rect. 7 23
559 226.87 temperature 20.0 270 > th dose independent rect. 19 12
564 226.87 humidity 70.0 43200 < th dose dependent rect. 21 18
575 226.89 atmosphere 1000.0 270 > th dose independent rect. 3 13
581 226.90 radiation 1.0 43200 < th dose independent rect. 7 1
592 226.91 precipitation 0.1 43200 < th dose independent rect. 4 1
597 226.91 radiation 1.0 4320 > th dose independent rect. 18 12
601 226.91 precipitation 0.1 43200 < th dose dependent rect. 4 1
611 226.93 humidity 70.0 43200 > th dose independent rect. 10 1
617 226.94 temperature 20.0 720 > th dose independent rect. 12 19
635 226.97 radiation 1.0 43200 > th dose independent rect. 7 1
637 226.97 temperature 20.0 720 > th dose independent rect. 12 11
664 227.00 atmosphere 1005.0 4320 < th dose dependent rect. 24 2
668 227.00 atmosphere 995.0 720 > th dose dependent rect. 21 18
691 227.01 temperature 30.0 30 < th dose dependent rect. 7 23
710 227.04 wind 1.0 14400 < th dose dependent rect. 19 3
718 227.06 humidity 70.0 43200 < th dose independent rect. 10 1
720 227.06 temperature 20.0 720 > th dose independent rect. 19 4
722 227.06 humidity 70.0 720 > th dose independent rect. 24 9
732 227.07 atmosphere 1015.0 720 < th dose dependent sin 11 NA
738 227.08 atmosphere 1000.0 720 > th dose independent rect. 19 5
755 227.11 precipitation 0.1 43200 > th dose independent rect. 4 1
776 227.13 humidity 90.0 43200 > th dose independent rect. 9 1
780 227.14 humidity 80.0 43200 < th dose dependent sin 0 NA
786 227.15 humidity 60.0 720 > th dose independent rect. 24 11
800 227.18 humidity 70.0 14400 < th dose dependent rect. 19 1
815 227.19 temperature 30.0 10 < th dose dependent rect. 18 19
819 227.20 precipitation 0.1 43200 > th dose dependent rect. 4 1
833 227.21 humidity 70.0 43200 < th dose dependent rect. 11 22
839 227.22 humidity 80.0 43200 < th dose dependent rect. 8 13
843 227.23 radiation 10.0 14400 < th dose independent rect. 5 9
845 227.23 radiation 10.0 14400 < th dose independent rect. 22 16
864 227.24 temperature 20.0 720 > th dose independent rect. 6 17
877 227.25 humidity 70.0 43200 < th dose dependent rect. 11 19
892 227.27 wind 9.0 720 < th dose independent rect. 3 16
896 227.27 humidity 70.0 43200 < th dose dependent rect. 11 14
902 227.28 humidity 50.0 720 > th dose independent rect. 23 13
907 227.28 humidity 70.0 43200 < th dose dependent rect. 8 22
937 227.31 humidity 70.0 43200 < th dose dependent rect. 4 21
945 227.32 humidity 70.0 43200 < th dose dependent no NA NA
977 227.34 humidity 70.0 43200 < th dose dependent rect. 8 18