BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0472400 Os05g0472400|J065165O22
(103 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G10970.1 | chr1:3665201-3666933 REVERSE LENGTH=409 57 2e-09
AT1G60960.1 | chr1:22445410-22447060 REVERSE LENGTH=426 57 2e-09
AT3G12750.1 | chr3:4051950-4053156 REVERSE LENGTH=356 54 1e-08
AT2G30080.1 | chr2:12838730-12840112 REVERSE LENGTH=342 54 1e-08
AT5G62160.1 | chr5:24960107-24961263 FORWARD LENGTH=356 52 5e-08
AT4G33020.1 | chr4:15932603-15934267 REVERSE LENGTH=345 52 8e-08
AT1G05300.1 | chr1:1545258-1547709 REVERSE LENGTH=361 52 9e-08
AT4G19690.2 | chr4:10707487-10708723 FORWARD LENGTH=348 48 1e-06
AT1G31260.1 | chr1:11175559-11177362 REVERSE LENGTH=365 47 2e-06
AT2G32270.1 | chr2:13704278-13706612 FORWARD LENGTH=340 47 2e-06
>AT1G10970.1 | chr1:3665201-3666933 REVERSE LENGTH=409
Length = 408
Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 24/31 (77%), Positives = 27/31 (87%)
Query: 28 SESPSTIRPLVAALTFHQFFEGIGLGGCIVQ 58
S+SP TIRPL+AAL+FHQFFEG LGGCI Q
Sbjct: 277 SQSPCTIRPLIAALSFHQFFEGFALGGCISQ 307
>AT1G60960.1 | chr1:22445410-22447060 REVERSE LENGTH=426
Length = 425
Score = 56.6 bits (135), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 24/31 (77%), Positives = 27/31 (87%)
Query: 28 SESPSTIRPLVAALTFHQFFEGIGLGGCIVQ 58
S+SP TIRPL+AAL+FHQFFEG LGGCI Q
Sbjct: 294 SQSPCTIRPLIAALSFHQFFEGFALGGCISQ 324
>AT3G12750.1 | chr3:4051950-4053156 REVERSE LENGTH=356
Length = 355
Score = 54.3 bits (129), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/30 (76%), Positives = 28/30 (93%)
Query: 27 ASESPSTIRPLVAALTFHQFFEGIGLGGCI 56
AS+S TI+PL+AAL+FHQFFEG+GLGGCI
Sbjct: 221 ASQSIDTIKPLMAALSFHQFFEGLGLGGCI 250
>AT2G30080.1 | chr2:12838730-12840112 REVERSE LENGTH=342
Length = 341
Score = 54.3 bits (129), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 27/31 (87%)
Query: 28 SESPSTIRPLVAALTFHQFFEGIGLGGCIVQ 58
S++ TIRPL+AAL+FHQ FEG+GLGGCI Q
Sbjct: 203 SQNKCTIRPLIAALSFHQIFEGLGLGGCIAQ 233
>AT5G62160.1 | chr5:24960107-24961263 FORWARD LENGTH=356
Length = 355
Score = 52.4 bits (124), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 23/32 (71%), Positives = 27/32 (84%)
Query: 27 ASESPSTIRPLVAALTFHQFFEGIGLGGCIVQ 58
AS S STI+PL+AA+TFHQ FEG GLGGCI +
Sbjct: 223 ASPSVSTIKPLIAAITFHQLFEGFGLGGCISE 254
>AT4G33020.1 | chr4:15932603-15934267 REVERSE LENGTH=345
Length = 344
Score = 51.6 bits (122), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 25/31 (80%)
Query: 28 SESPSTIRPLVAALTFHQFFEGIGLGGCIVQ 58
S SP TIRPL+ AL+FHQFFEG LGGC+ +
Sbjct: 213 SHSPCTIRPLLLALSFHQFFEGFALGGCVAE 243
>AT1G05300.1 | chr1:1545258-1547709 REVERSE LENGTH=361
Length = 360
Score = 51.6 bits (122), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 27 ASESPSTIRPLVAALTFHQFFEGIGLGGCIVQ---VCVFLSLPHDTNSVSVPKGPTV 80
AS+SP T + L AAL FHQ FEG+GLGGCI Q C+ +++ SV+ P G V
Sbjct: 228 ASQSPDTAKALFAALMFHQCFEGLGLGGCIAQGNFNCMSITIMSIFFSVTTPVGIAV 284
>AT4G19690.2 | chr4:10707487-10708723 FORWARD LENGTH=348
Length = 347
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 25/32 (78%)
Query: 27 ASESPSTIRPLVAALTFHQFFEGIGLGGCIVQ 58
A+ TI+ L+AAL FHQ FEG+GLGGCI+Q
Sbjct: 215 ATSDTCTIKGLIAALCFHQMFEGMGLGGCILQ 246
>AT1G31260.1 | chr1:11175559-11177362 REVERSE LENGTH=365
Length = 364
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/26 (76%), Positives = 23/26 (88%)
Query: 33 TIRPLVAALTFHQFFEGIGLGGCIVQ 58
TI+ LVAAL FHQ FEG+GLGGCI+Q
Sbjct: 238 TIKGLVAALCFHQMFEGMGLGGCILQ 263
>AT2G32270.1 | chr2:13704278-13706612 FORWARD LENGTH=340
Length = 339
Score = 46.6 bits (109), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 27 ASESPSTIRPLVAALTFHQFFEGIGLGGCIVQ---VCVFLSLPHDTNSVSVPKGPTV 80
AS+SP + L AL FHQ FEG+GLGGCI Q C+ +++ +++ P G V
Sbjct: 207 ASQSPDAAKALFIALMFHQCFEGLGLGGCIAQGKFKCLSVTIMSTFFAITTPIGIVV 263
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.137 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,965,206
Number of extensions: 64349
Number of successful extensions: 124
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 10
Length of query: 103
Length of database: 11,106,569
Length adjustment: 73
Effective length of query: 30
Effective length of database: 9,105,201
Effective search space: 273156030
Effective search space used: 273156030
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 104 (44.7 bits)