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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0613000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Zinc transporter ZIP1 (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.72 (0.0725) R2 : 0.302
β1 : -2.18 (0.4) R2dD : 0.158 R2D : -0.198
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.58 (0.268) R2dE : 0.464 R2E : 0.195
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -10.6 (1.94) R2dD*E : 0.171 R2D*E : -0.205
γ1 : -0.356 (0.153) R2dN8 : 0.016 R2N8 : -0.041
σ : 1.12
deviance : 573.13
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 24.86
memory length : 755
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
571.91 1.12 3.73 -2.22 0.121 3.51 0.551 -10.8 -0.373 18.1 24.81 767 -- --
603.1 1.14 3.53 -0.35 0.2 2.53 -0.795 -- -0.000834 22 24.07 703 -- --
572.55 1.11 3.72 -2.16 0.129 3.49 -- -10.5 -0.344 18 24.88 769 -- --
605.83 1.15 3.52 -0.336 0.269 2.51 -- -- 0.0393 18.9 23.95 742 -- --
573.13 1.12 3.72 -2.18 -- 3.58 -- -10.6 -0.356 -- 24.86 755 -- --
735.28 1.27 3.47 0.231 1.19 -- -0.266 -- 0.333 20 -- -- -- --
735.49 1.27 3.47 0.239 1.19 -- -- -- 0.333 20 -- -- -- --
607.79 1.15 3.51 -0.37 -- 2.69 -- -- 0.0198 -- 24 699 -- --
608.6 1.15 3.5 -- 0.28 2.42 -- -- 0.0871 19.8 24.02 719 -- --
813.3 1.33 3.44 0.227 -- -- -- -- 0.317 -- -- -- -- --
736.99 1.27 3.48 -- 1.19 -- -- -- 0.306 20 -- -- -- --
611.16 1.15 3.5 -- -- 2.62 -- -- 0.0749 -- 24.1 692 -- --
814.66 1.33 3.45 -- -- -- -- -- 0.292 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 567.31 temperature 25 720 > th dose dependent rect. 11 22
6 569.98 temperature 25 720 > th dose dependent sin 19 NA
8 570.48 temperature 25 720 > th dose dependent rect. 14 20
12 571.20 temperature 25 720 > th dose dependent rect. 11 12
13 571.26 temperature 25 720 > th dose dependent rect. 11 9
21 571.95 temperature 25 720 > th dose dependent rect. 11 18
29 572.42 temperature 30 720 > th dose independent rect. 14 22
31 572.42 temperature 25 720 > th dose dependent rect. 14 23
44 573.01 temperature 25 720 > th dose dependent rect. 8 23
46 573.05 temperature 25 720 > th dose dependent rect. 8 21
53 573.27 temperature 25 720 > th dose dependent rect. 8 15
57 573.57 temperature 25 720 > th dose dependent rect. 24 23
66 573.69 temperature 25 720 > th dose dependent no NA NA
67 573.69 temperature 25 720 > th dose dependent rect. 3 23
112 574.29 temperature 25 720 > th dose dependent rect. 21 23
122 574.75 temperature 25 720 > th dose dependent rect. 17 23
146 576.26 temperature 30 720 > th dose independent rect. 17 23
155 576.75 temperature 25 720 > th dose dependent rect. 14 6
178 578.31 temperature 30 720 > th dose independent sin 19 NA
186 579.08 temperature 30 720 > th dose independent rect. 9 10
200 579.11 temperature 30 720 > th dose independent rect. 11 23
207 579.62 temperature 30 720 > th dose independent rect. 14 5
222 579.65 radiation 1 14400 < th dose dependent rect. 3 2
223 579.71 temperature 30 720 > th dose independent no NA NA
338 580.37 temperature 30 720 < th dose independent sin 21 NA
340 580.40 temperature 30 720 < th dose independent rect. 5 16
376 581.02 temperature 30 720 < th dose independent no NA NA
403 582.68 temperature 30 720 < th dose independent rect. 9 16
414 583.50 temperature 30 720 < th dose independent rect. 3 23
430 584.04 temperature 30 720 > th dose independent rect. 14 1
505 586.87 temperature 30 720 > th dose dependent rect. 14 1
506 587.08 temperature 30 720 < th dose independent rect. 19 23
507 587.11 temperature 30 720 < th dose independent rect. 12 23
510 587.23 temperature 30 720 < th dose independent rect. 5 23
516 587.76 temperature 30 720 < th dose independent rect. 9 8
522 588.04 temperature 30 720 < th dose independent rect. 9 23
529 588.41 temperature 30 720 < th dose independent rect. 13 8
552 589.67 temperature 30 720 < th dose independent rect. 3 15
564 591.03 temperature 30 720 < th dose independent rect. 12 16
588 592.38 temperature 30 720 < th dose independent sin 12 NA
590 592.52 radiation 40 43200 < th dose independent rect. 10 1
608 592.71 temperature 30 720 < th dose independent rect. 1 16
616 593.03 temperature 30 720 < th dose independent rect. 13 18
633 593.86 radiation 20 43200 < th dose independent rect. 8 1
698 596.12 temperature 30 720 < th dose independent rect. 5 20
716 596.24 radiation 1 43200 < th dose dependent rect. 21 8
729 596.62 radiation 20 43200 < th dose independent rect. 17 16
743 596.84 radiation 20 43200 < th dose independent rect. 2 7
748 596.86 radiation 20 43200 < th dose independent rect. 19 14
763 596.87 radiation 20 43200 < th dose independent rect. 23 10
772 597.00 radiation 40 43200 > th dose dependent rect. 10 1
779 597.16 wind 1 43200 < th dose dependent rect. 24 2
799 597.59 temperature 30 720 < th dose independent rect. 22 23
812 597.96 wind 5 43200 > th dose dependent rect. 13 3
820 598.36 radiation 40 43200 > th dose independent rect. 10 1
910 599.62 radiation 40 43200 < th dose independent rect. 16 19
918 599.72 radiation 40 43200 < th dose independent rect. 5 6
941 599.74 radiation 40 43200 < th dose independent rect. 19 16
944 599.75 radiation 40 43200 < th dose independent rect. 7 4
946 599.75 radiation 40 43200 < th dose independent rect. 23 12