Os03g0667300 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0667300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Metal transport protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	5.04	(0.031)	R²	:	0.183
β₁	:	--	(--)	R²_dD	:	--	R²_D	:	--
β₂	:	0.754	(0.0753)	R²_dC	:	0.18	R²_C	:	0.178
β₃	:	--	(--)	R²_dE	:	--	R²_E	:	--
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	0.0978	(0.0654)	R²_dN8	:	0.00518	R²_N8	:	0.00283
σ	:	0.586
deviance	:	156.81
__

_____

C
peak time of C	:	13.8
E
wheather	:	--
threshold	:	--
memory length	:	--
response mode	:	--
dose dependency	:	--
G
type of G	:	--
peak or start time of G	:	--
open length of G	:	--

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
138.25	0.552	5.07	-0.577	0.639	0.431	0.403	0.572	-0.0226	13.8	20.6	8	--	--
138.5	0.548	5.09	-0.703	0.645	0.422	0.684	--	-0.0615	13.7	20.7	93	--	--
138.15	0.552	5.06	-0.49	0.62	0.403	--	0.752	-0.0135	13.9	21	17	--	--
140.31	0.552	5.08	-0.672	0.64	0.43	--	--	-0.0569	13.7	20.8	129	--	--
158.3	0.586	5.06	-0.538	--	0.633	--	0.82	-0.0386	--	20.9	41	--	--
146.42	0.567	5.06	-0.587	0.74	--	0.726	--	0.0304	13.6	--	--	--	--
148.45	0.571	5.06	-0.563	0.744	--	--	--	0.0351	13.8	--	--	--	--
161.6	0.592	5.1	-0.762	--	0.64	--	--	-0.12	--	20.94	81	--	--
152.2	0.575	5.06	--	0.675	0.349	--	--	0.0316	13.8	20.77	134	--	--
182.01	0.63	5.07	-0.594	--	--	--	--	0.0182	--	--	--	--	--
156.81	0.586	5.04	--	0.754	--	--	--	0.0978	13.8	--	--	--	--
176.35	0.619	5.07	--	--	0.537	--	--	-0.0162	--	20.91	79	--	--
191.3	0.646	5.05	--	--	--	--	--	0.084	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	132.44	temperature	30.0	270	< th	dose dependent	rect.	22	8
4	133.65	temperature	20.0	10	> th	dose independent	rect.	21	16
7	133.92	temperature	20.0	10	> th	dose independent	rect.	19	18
10	134.06	wind	1.0	270	< th	dose dependent	rect.	22	1
12	134.15	temperature	20.0	270	> th	dose independent	rect.	16	10
14	134.20	temperature	20.0	90	> th	dose independent	rect.	23	13
15	134.26	temperature	10.0	270	> th	dose dependent	rect.	17	9
21	134.51	temperature	20.0	10	> th	dose independent	rect.	24	13
31	134.76	wind	1.0	30	< th	dose dependent	rect.	22	4
46	134.97	temperature	20.0	10	> th	dose independent	rect.	19	8
54	135.10	temperature	20.0	90	> th	dose independent	rect.	17	20
64	135.26	temperature	20.0	10	> th	dose independent	rect.	8	19
86	135.53	temperature	20.0	10	> th	dose independent	rect.	17	10
90	135.57	wind	1.0	270	< th	dose independent	rect.	22	1
96	135.71	temperature	30.0	270	< th	dose dependent	rect.	13	17
124	136.02	temperature	30.0	270	< th	dose dependent	rect.	1	5
128	136.07	wind	1.0	270	< th	dose dependent	rect.	15	9
150	136.28	wind	1.0	270	< th	dose dependent	rect.	17	7
152	136.30	temperature	30.0	270	< th	dose independent	rect.	6	5
178	136.49	temperature	20.0	30	> th	dose independent	rect.	21	6
185	136.56	temperature	30.0	30	< th	dose independent	rect.	8	5
194	136.61	radiation	20.0	10	< th	dose independent	rect.	3	14
200	136.67	wind	1.0	30	< th	dose dependent	rect.	10	17
227	136.86	temperature	30.0	270	< th	dose independent	rect.	7	3
232	136.87	wind	9.0	270	< th	dose independent	rect.	16	10
252	136.94	temperature	30.0	90	< th	dose dependent	rect.	3	5
262	137.04	radiation	40.0	90	< th	dose dependent	rect.	3	14
284	137.13	temperature	20.0	10	> th	dose independent	sin	6	NA
290	137.15	precipitation	0.1	270	< th	dose independent	rect.	2	14
292	137.15	precipitation	0.1	270	< th	dose dependent	rect.	2	14
294	137.16	radiation	40.0	10	< th	dose dependent	rect.	3	14
296	137.18	temperature	20.0	90	> th	dose independent	sin	6	NA
299	137.18	temperature	15.0	10	> th	dose dependent	rect.	21	6
307	137.21	radiation	40.0	90	< th	dose independent	rect.	3	14
315	137.24	humidity	50.0	270	> th	dose independent	rect.	2	14
324	137.28	wind	1.0	270	> th	dose independent	rect.	11	19
342	137.35	precipitation	0.1	270	< th	dose independent	rect.	11	19
343	137.35	precipitation	0.1	270	< th	dose dependent	rect.	11	19
354	137.39	radiation	40.0	270	< th	dose independent	rect.	16	10
355	137.39	temperature	10.0	270	> th	dose independent	rect.	2	14
356	137.39	atmosphere	1015.0	270	< th	dose independent	rect.	2	14
376	137.46	temperature	30.0	90	< th	dose dependent	sin	9	NA
395	137.54	temperature	10.0	10	> th	dose dependent	rect.	19	8
405	137.57	wind	1.0	30	< th	dose independent	rect.	21	5
410	137.57	precipitation	0.1	270	< th	dose independent	rect.	10	21
411	137.57	precipitation	0.1	270	< th	dose dependent	rect.	10	21
440	137.67	atmosphere	995.0	270	> th	dose independent	rect.	2	14
447	137.69	wind	9.0	90	< th	dose dependent	rect.	17	10
452	137.72	temperature	30.0	30	< th	dose independent	rect.	8	19
497	137.84	wind	1.0	270	> th	dose independent	rect.	1	5
552	137.96	radiation	20.0	30	< th	dose independent	sin	4	NA
558	137.97	wind	9.0	270	< th	dose independent	rect.	2	14
566	137.98	wind	9.0	270	< th	dose independent	rect.	5	22
574	138.00	wind	9.0	270	< th	dose dependent	rect.	6	5
581	138.01	temperature	20.0	10	< th	dose independent	rect.	17	15
590	138.03	temperature	30.0	270	< th	dose independent	rect.	21	14
603	138.06	temperature	20.0	10	> th	dose independent	rect.	14	23
608	138.08	atmosphere	1010.0	90	< th	dose independent	rect.	3	6
616	138.09	wind	9.0	270	< th	dose independent	rect.	6	5
637	138.12	wind	9.0	270	< th	dose independent	rect.	6	20
641	138.13	radiation	1.0	270	> th	dose independent	rect.	6	5
643	138.13	precipitation	0.1	270	< th	dose independent	rect.	16	10
646	138.13	precipitation	0.1	270	< th	dose dependent	rect.	16	10
647	138.13	wind	1.0	270	< th	dose dependent	rect.	9	17
648	138.14	temperature	10.0	270	> th	dose independent	rect.	6	5
649	138.14	atmosphere	995.0	270	> th	dose independent	rect.	6	5
650	138.14	atmosphere	1015.0	270	< th	dose independent	rect.	6	5
651	138.14	precipitation	0.1	270	< th	dose independent	rect.	6	5
652	138.14	temperature	10.0	270	> th	dose independent	rect.	11	19
653	138.14	precipitation	0.1	270	< th	dose dependent	rect.	6	5
668	138.18	wind	9.0	90	< th	dose independent	rect.	8	19
677	138.19	radiation	40.0	270	< th	dose dependent	rect.	16	10
679	138.20	temperature	20.0	10	< th	dose independent	sin	8	NA
687	138.20	temperature	15.0	10	> th	dose dependent	rect.	21	16
700	138.23	temperature	15.0	1440	> th	dose independent	rect.	9	5
708	138.24	precipitation	0.1	10	< th	dose independent	rect.	13	19
711	138.24	precipitation	0.1	10	< th	dose dependent	rect.	13	19
716	138.25	radiation	40.0	90	< th	dose dependent	rect.	3	5
737	138.30	wind	1.0	30	> th	dose dependent	rect.	4	4
741	138.31	radiation	20.0	30	> th	dose independent	rect.	7	6
772	138.33	radiation	20.0	90	< th	dose independent	rect.	3	5
815	138.38	humidity	70.0	90	> th	dose independent	rect.	3	5
820	138.39	radiation	20.0	10	< th	dose independent	rect.	3	6
829	138.40	wind	1.0	270	> th	dose independent	rect.	3	2
833	138.41	temperature	20.0	90	< th	dose independent	rect.	23	8
838	138.41	radiation	10.0	14400	< th	dose dependent	rect.	19	9
841	138.42	wind	9.0	1440	< th	dose independent	rect.	4	6
854	138.45	precipitation	0.1	270	< th	dose independent	rect.	3	2
862	138.45	precipitation	0.1	270	< th	dose dependent	rect.	3	2
871	138.46	atmosphere	995.0	270	> th	dose independent	rect.	16	10
875	138.46	temperature	20.0	10	> th	dose independent	rect.	21	23
879	138.46	temperature	10.0	270	> th	dose dependent	rect.	21	13
880	138.47	precipitation	0.1	270	< th	dose independent	rect.	2	4
884	138.47	atmosphere	995.0	270	> th	dose independent	rect.	11	19
886	138.47	wind	9.0	270	< th	dose dependent	rect.	7	3
888	138.47	precipitation	0.1	270	< th	dose dependent	rect.	2	4
890	138.48	precipitation	0.1	270	< th	dose independent	rect.	7	3
894	138.48	precipitation	0.1	270	< th	dose dependent	rect.	7	3
900	138.49	temperature	10.0	270	> th	dose independent	rect.	7	3
901	138.49	atmosphere	995.0	270	> th	dose independent	rect.	7	3
902	138.49	atmosphere	1015.0	270	< th	dose independent	rect.	7	3
907	138.49	temperature	10.0	270	> th	dose independent	rect.	10	21
909	138.50	wind	9.0	270	< th	dose independent	rect.	7	3
910	138.50	wind	1.0	270	> th	dose independent	rect.	23	7
913	138.50	humidity	50.0	270	> th	dose independent	rect.	11	19
954	138.55	radiation	30.0	270	< th	dose independent	rect.	7	2
982	138.58	temperature	10.0	90	> th	dose dependent	sin	9	NA