Os05g0198400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Zinc transporter 4, chloroplast precursor (ZRT/IRT-like protein 4).
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Os05g0198400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Zinc transporter 4, chloroplast precursor (ZRT/IRT-like protein 4).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 98.19 | 0.466 | 10.7 | 0.239 | 1.91 | -0.653 | -0.116 | -2.9 | 0.27 | 0.309 | 24.38 | 1636 | -- | -- |
| 101.26 | 0.469 | 10.6 | 0.998 | 1.91 | -0.917 | -0.0796 | -- | 0.442 | 0.316 | 25.33 | 1561 | -- | -- |
| 98.25 | 0.462 | 10.7 | 0.244 | 1.91 | -0.655 | -- | -2.92 | 0.27 | 0.299 | 24.4 | 1648 | -- | -- |
| 101.15 | 0.468 | 10.6 | 1.01 | 1.92 | -0.883 | -- | -- | 0.421 | 0.343 | 25.68 | 1542 | -- | -- |
| 206.36 | 0.673 | 10.5 | 1.27 | -- | -2.47 | -- | 0.145 | 0.765 | -- | 21.43 | 1675 | -- | -- |
| 131.83 | 0.538 | 10.6 | 0.713 | 1.88 | -- | -0.198 | -- | 0.342 | 0.349 | -- | -- | -- | -- |
| 132 | 0.538 | 10.6 | 0.72 | 1.88 | -- | -- | -- | 0.343 | 0.347 | -- | -- | -- | -- |
| 205.08 | 0.667 | 10.5 | 1.26 | -- | -2.5 | -- | -- | 0.774 | -- | 20.9 | 2 | -- | -- |
| 125.02 | 0.521 | 10.7 | -- | 1.93 | -0.81 | -- | -- | 0.179 | 0.264 | 28.82 | 2124 | -- | -- |
| 353.73 | 0.879 | 10.6 | 0.783 | -- | -- | -- | -- | 0.373 | -- | -- | -- | -- | -- |
| 145.68 | 0.565 | 10.7 | -- | 1.89 | -- | -- | -- | 0.263 | 0.367 | -- | -- | -- | -- |
| 245.12 | 0.729 | 10.5 | -- | -- | -2.23 | -- | -- | 0.592 | -- | 21.3 | 2 | -- | -- |
| 369.92 | 0.898 | 10.6 | -- | -- | -- | -- | -- | 0.286 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 96.30 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 6 | 2 |
| 2 | 96.46 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 6 | 2 |
| 4 | 97.04 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 6 | 97.75 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 7 | 3 |
| 10 | 97.86 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 11 | 97.87 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 4 | 6 |
| 18 | 98.01 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 29 | 98.11 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 18 | 20 |
| 32 | 98.15 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 5 | 20 |
| 36 | 98.22 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 42 | 98.25 | temperature | 25.0 | 1440 | > th | dose dependent | sin | 7 | NA |
| 60 | 98.40 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 20 | 15 |
| 94 | 98.61 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 116 | 98.69 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 20 | 2 |
| 133 | 98.86 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 3 | 11 |
| 137 | 98.88 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 22 | 16 |
| 138 | 98.89 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 8 | 6 |
| 179 | 99.08 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 8 | 6 |
| 196 | 99.10 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 7 | 15 |
| 203 | 99.11 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 23 | 23 |
| 207 | 99.13 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 7 | 18 |
| 226 | 99.16 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 250 | 99.18 | temperature | 25.0 | 1440 | > th | dose dependent | no | NA | NA |
| 271 | 99.22 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 12 | 23 |
| 291 | 99.29 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 295 | 99.29 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 347 | 99.49 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 19 | 2 |
| 480 | 99.87 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 10 |
| 489 | 99.90 | temperature | 20.0 | 10 | > th | dose dependent | no | NA | NA |
| 520 | 99.97 | temperature | 30.0 | 1440 | < th | dose independent | sin | 6 | NA |
| 527 | 99.99 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 10 |
| 672 | 100.17 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 10 |
| 727 | 100.25 | temperature | 30.0 | 1440 | > th | dose independent | sin | 6 | NA |
| 771 | 100.31 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 19 | 3 |
| 933 | 100.55 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 934 | 100.55 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 937 | 100.55 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 7 | 15 |