Os05g0472700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Metal transport protein.
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Os05g0472700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Metal transport protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 371.19 | 0.905 | 5.27 | -4.86 | 0.918 | 3.23 | -1.86 | -15.8 | -0.433 | 18.2 | 24.4 | 910 | -- | -- |
| 450.8 | 0.989 | 4.91 | -1.88 | 1.39 | 2.04 | -2.72 | -- | 0.247 | 19.7 | -28.91 | 1780 | -- | -- |
| 378.27 | 0.906 | 5.26 | -4.78 | 0.819 | 3.17 | -- | -15.6 | -0.45 | 18.3 | 24.06 | 860 | -- | -- |
| 463.57 | 1 | 4.95 | -2 | 1.44 | 2.03 | -- | -- | 0.0893 | 19.3 | 10.31 | 8180 | -- | -- |
| 394.06 | 0.925 | 5.27 | -4.95 | -- | 3.72 | -- | -17.6 | -0.557 | -- | 23.99 | 732 | -- | -- |
| 522.88 | 1.07 | 4.84 | -1.23 | 1.5 | -- | -2.96 | -- | 0.605 | 19.6 | -- | -- | -- | -- |
| 547.55 | 1.1 | 4.85 | -1.16 | 1.5 | -- | -- | -- | 0.6 | 19.7 | -- | -- | -- | -- |
| 531.4 | 1.07 | 4.91 | -1.89 | -- | 2.97 | -- | -- | 0.136 | -- | 5.059 | 643 | -- | -- |
| 556.61 | 1.1 | 4.84 | -- | 1.5 | 0.838 | -- | -- | 0.613 | 19.5 | 22.6 | 5373 | -- | -- |
| 668.6 | 1.21 | 4.81 | -1.18 | -- | -- | -- | -- | 0.578 | -- | -- | -- | -- | -- |
| 583 | 1.13 | 4.82 | -- | 1.51 | -- | -- | -- | 0.729 | 19.7 | -- | -- | -- | -- |
| 594.24 | 1.14 | 4.82 | -- | -- | 1.94 | -- | -- | 0.541 | -- | 23.98 | 699 | -- | -- |
| 705.26 | 1.24 | 4.78 | -- | -- | -- | -- | -- | 0.709 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 368.23 | wind | 5 | 43200 | < th | dose independent | rect. | 10 | 7 |
| 2 | 368.42 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 5 |
| 3 | 369.04 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 5 |
| 12 | 370.19 | wind | 3 | 43200 | > th | dose dependent | rect. | 10 | 7 |
| 21 | 370.86 | wind | 3 | 43200 | > th | dose dependent | rect. | 11 | 5 |
| 22 | 370.93 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 3 |
| 33 | 371.55 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 40 | 371.90 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 15 |
| 42 | 371.96 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 11 |
| 51 | 372.23 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 13 |
| 55 | 372.36 | wind | 5 | 43200 | < th | dose independent | sin | 21 | NA |
| 80 | 373.31 | wind | 9 | 43200 | < th | dose dependent | rect. | 11 | 4 |
| 81 | 373.35 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 14 |
| 84 | 373.38 | wind | 5 | 43200 | > th | dose independent | sin | 21 | NA |
| 105 | 374.10 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 14 |
| 129 | 374.60 | wind | 9 | 43200 | < th | dose dependent | rect. | 12 | 2 |
| 147 | 375.01 | temperature | 20 | 90 | > th | dose dependent | sin | 14 | NA |
| 149 | 375.06 | wind | 9 | 43200 | < th | dose dependent | rect. | 9 | 7 |
| 162 | 375.29 | wind | 3 | 43200 | > th | dose dependent | sin | 22 | NA |
| 220 | 376.50 | temperature | 25 | 720 | > th | dose dependent | rect. | 14 | 19 |
| 230 | 376.72 | temperature | 20 | 270 | > th | dose dependent | sin | 16 | NA |
| 239 | 376.91 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 248 | 377.06 | wind | 5 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 356 | 378.88 | wind | 5 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 361 | 379.01 | temperature | 20 | 720 | > th | dose dependent | sin | 19 | NA |
| 426 | 380.05 | temperature | 20 | 720 | > th | dose dependent | rect. | 11 | 12 |
| 469 | 380.58 | humidity | 80 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 487 | 380.72 | temperature | 20 | 720 | > th | dose dependent | rect. | 13 | 10 |
| 550 | 381.68 | temperature | 20 | 720 | > th | dose dependent | rect. | 7 | 17 |
| 576 | 382.03 | temperature | 25 | 720 | < th | dose independent | rect. | 8 | 16 |
| 594 | 382.16 | humidity | 80 | 43200 | < th | dose dependent | rect. | 21 | 2 |
| 595 | 382.16 | wind | 9 | 43200 | < th | dose dependent | rect. | 8 | 14 |
| 629 | 382.43 | radiation | 10 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 729 | 383.27 | wind | 9 | 43200 | < th | dose dependent | sin | 23 | NA |
| 741 | 383.39 | humidity | 80 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 785 | 383.80 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 856 | 384.36 | temperature | 25 | 720 | > th | dose independent | rect. | 7 | 17 |