BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0470700 Os05g0470700|J033093B01
(562 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0470700 Zinc finger, RING-type domain containing protein 817 0.0
Os01g0830200 Zinc finger, RING-type domain containing protein 489 e-138
Os08g0162400 Zinc finger, RING-type domain containing protein 141 1e-33
Os12g0636000 Zinc finger, RING-type domain containing protein 116 4e-26
Os01g0766200 Zinc finger, RING-type domain containing protein 115 7e-26
Os03g0678400 Zinc finger, RING-type domain containing protein 112 7e-25
Os02g0639800 Zinc finger, RING-type domain containing protein 90 4e-18
Os04g0530500 Zinc finger, RING-type domain containing protein 86 5e-17
AK065326 86 5e-17
>Os05g0470700 Zinc finger, RING-type domain containing protein
Length = 562
Score = 817 bits (2111), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/530 (81%), Positives = 432/530 (81%)
Query: 33 GSDLALGTPMLXXXXXXXXXXXXXXXLETEPLHPPYSPPPAELVRPPTPLPEPYDXXXXX 92
GSDLALGTPML LETEPLHPPYSPPPAELVRPPTPLPEPYD
Sbjct: 33 GSDLALGTPMLSSSPSSSAASADAPPLETEPLHPPYSPPPAELVRPPTPLPEPYDPSAPE 92
Query: 93 XXXXXXXXXXXXXXXXXXLADDLEFGFSHPPLLLRPSELLGWVDRPXXXXXXXXFRPERV 152
LADDLEFGFSHPPLLLRPSELLGWVDRP FRPERV
Sbjct: 93 AHPPYVPPPVPPPEAIPELADDLEFGFSHPPLLLRPSELLGWVDRPSSSTASSSFRPERV 152
Query: 153 DRYRPPVICLNSRQSRCLRPRRFRSDLPPLGSEAPALENDXXXXXXXXXXXXDTVEENKV 212
DRYRPPVICLNSRQSRCLRPRRFRSDLPPLGSEAPALEND DTVEENKV
Sbjct: 153 DRYRPPVICLNSRQSRCLRPRRFRSDLPPLGSEAPALENDAAAQPPPQEPMQDTVEENKV 212
Query: 213 VADGAIVGASEEEPAERGKSVAMFECNICFEMASEPVVTSCGHLFCWPCLYQWLHVHSTH 272
VADGAIVGASEEEPAERGKSVAMFECNICFEMASEPVVTSCGHLFCWPCLYQWLHVHSTH
Sbjct: 213 VADGAIVGASEEEPAERGKSVAMFECNICFEMASEPVVTSCGHLFCWPCLYQWLHVHSTH 272
Query: 273 KECPVCKGEVTEGNITPIYGRGNSTSDAEKKVAEEGNVSGPTIPPRPHGNRLESFRQKFH 332
KECPVCKGEVTEGNITPIYGRGNSTSDAEKKVAEEGNVSGPTIPPRPHGNRLESFRQKFH
Sbjct: 273 KECPVCKGEVTEGNITPIYGRGNSTSDAEKKVAEEGNVSGPTIPPRPHGNRLESFRQKFH 332
Query: 333 HLRPISRRLGEAHGILSSWRRILDQQIMNSVSRFEGPPESTVQEMIDHAHHASRLGRITT 392
HLRPISRRLGEAHGILSSWRRILDQQIMNSVSRFEGPPESTVQEMIDHAHHASRLGRITT
Sbjct: 333 HLRPISRRLGEAHGILSSWRRILDQQIMNSVSRFEGPPESTVQEMIDHAHHASRLGRITT 392
Query: 393 RMRARRLQREAENSTFVASSAAESGLPANSTSDLXXXXXXXXXXERIDLLQHFVDLASTE 452
RMRARRLQREAENSTFVASSAAESGLPANSTSDL ERIDLLQHFVDLASTE
Sbjct: 393 RMRARRLQREAENSTFVASSAAESGLPANSTSDLPRRSSSPFSSERIDLLQHFVDLASTE 452
Query: 453 RLASAVSDLRRMVRPSPYGAXXXXXXXXXXXXELLPVDGNHVAVALAADQASNSSTMAVI 512
RLASAVSDLRRMVRPSPYGA ELLPVDGNHVAVALAADQASNSSTMAVI
Sbjct: 453 RLASAVSDLRRMVRPSPYGASTSSNPPNPPNTELLPVDGNHVAVALAADQASNSSTMAVI 512
Query: 513 QEDAAFTESTGEPXXXXXXXXXXXXXXXXXXGSLDVDGVGLHRNKRRRLN 562
QEDAAFTESTGEP GSLDVDGVGLHRNKRRRLN
Sbjct: 513 QEDAAFTESTGEPSNAGSSRSLRRRGRNDALGSLDVDGVGLHRNKRRRLN 562
>Os01g0830200 Zinc finger, RING-type domain containing protein
Length = 561
Score = 489 bits (1260), Expect = e-138, Method: Compositional matrix adjust.
Identities = 272/459 (59%), Positives = 300/459 (65%), Gaps = 15/459 (3%)
Query: 111 LADDLEFGFSHPPLLLRPSELLGWVDRPXXXXXXXXFRPERVDRYRPPVICLNSRQSRCL 170
L DDLEFG PP L+R SELLGW DRP F P+ RY L SR L
Sbjct: 111 LPDDLEFGLHPPPPLVRASELLGWEDRPSSSTASSSFLPDTAARY---WRLLEQTGSRWL 167
Query: 171 RPRRFRSDLPPLGSEA-PALENDXXXXXXXXXXXXDTVEENKVVADGAIVGASEEEPAER 229
R RRFRSDLPPL SEA PA + DTVE NKV ADGA VGASEE E+
Sbjct: 168 RARRFRSDLPPLSSEAYPAGRDAAAVPVLQHEPMNDTVEHNKVAADGAEVGASEES-EEQ 226
Query: 230 GKSVAMFECNICFEMASEPVVTSCGHLFCWPCLYQWLHVHSTHKECPVCKGEVTEGNITP 289
G+S A FECNICF+MASEPVVTSCGHLFCWPCLYQWL+V+S HKECPVCKGEVTE NITP
Sbjct: 227 GRSAATFECNICFDMASEPVVTSCGHLFCWPCLYQWLNVYSNHKECPVCKGEVTEANITP 286
Query: 290 IYGRGNSTSDAEKKVAEEGNVSGPTIPPRPHGNRLESFRQKFHHLRPISRRLGEAHGILS 349
IYGRGNS DAEK V E G +GPTIPPRPHGNRLESFRQ+FHHLRPISRRLGEAHG+LS
Sbjct: 287 IYGRGNSCLDAEKAV-EGGKQTGPTIPPRPHGNRLESFRQQFHHLRPISRRLGEAHGLLS 345
Query: 350 SWRRILDQQIMNSVSRFEGPPESTVQEMID--HAHHASRLGRITTRMRARRLQREAENST 407
SWRR+LDQQIMN+ SRFEGPPES VQEM+D HA H SRL R+ +RMRARRL REA+N
Sbjct: 346 SWRRLLDQQIMNTASRFEGPPESAVQEMVDTAHAQHTSRLSRLASRMRARRLLREADNPN 405
Query: 408 --FVASSAAESGLPANSTSDLXXXXXXXXXXERIDLLQHFVDLA--STERLASAVSDLRR 463
S++ +SGL N+ SD + ID L+ L TER ASA+SD RR
Sbjct: 406 PPDGGSTSPDSGLIRNNASDPSRNGPSSLLPDGIDWLRGLTLLGYEDTERFASAMSDFRR 465
Query: 464 MVRPSPYGAXXXXXXXXXXXXELLPVDGNHVAVALAADQASNSSTMAVIQEDAAFTESTG 523
+ PS YGA D HV A +ADQASNSST AVIQ DA +ES G
Sbjct: 466 ITGPSQYGASASSSNPPNLESTF---DRTHVVAAPSADQASNSSTAAVIQGDAGISESAG 522
Query: 524 EPXXXXXXXXXXXXXXXXXXGSLDVDGVGLHRNKRRRLN 562
EP GSLD DG GL RNKRRR+N
Sbjct: 523 EPSNAGSSRSLRRRGRSSALGSLDADGGGLQRNKRRRIN 561
>Os08g0162400 Zinc finger, RING-type domain containing protein
Length = 455
Score = 141 bits (355), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 65/123 (52%), Positives = 78/123 (63%), Gaps = 15/123 (12%)
Query: 236 FECNICFEMASEPVVTSCGHLFCWPCLYQWLHVHSTHKECPVCKGEVTEGNITPIYGRGN 295
FECNICFE A +PVVT CGHLFCWPC+YQWLH HS H +CPVCKGEV E N+TPIYGRG
Sbjct: 239 FECNICFESAKDPVVTPCGHLFCWPCIYQWLHGHSEHSDCPVCKGEVLEVNVTPIYGRGG 298
Query: 296 STSDAEKKVAEEGNVSGPTIPPRPHGNRLESFRQKFHHLRPISRRLGEAHGILSSWRRIL 355
++ + + IPPRP R ES RQ+ RP +R GI + RR++
Sbjct: 299 GEENSSRNDIQ--------IPPRPSAQRTESLRQQLQ--RPDTR-----GGIANMVRRLM 343
Query: 356 DQQ 358
Q
Sbjct: 344 QNQ 346
>Os12g0636000 Zinc finger, RING-type domain containing protein
Length = 234
Score = 116 bits (291), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 52/88 (59%), Positives = 58/88 (65%), Gaps = 5/88 (5%)
Query: 236 FECNICFEMASEPVVTSCGHLFCWPCLYQWLHVHSTHKECPVCKGEVTEGNITPIYGRGN 295
FECNICFE+ EP+VT CGHLFCWPCLY+WLH+HS ECPVCK V E + P+YGRG
Sbjct: 23 FECNICFELPQEPIVTLCGHLFCWPCLYKWLHIHSHSPECPVCKAVVEEDKLVPLYGRGK 82
Query: 296 STSDAEKKVAEEGNVSGPTIPPRPHGNR 323
D K NV G IP RP G R
Sbjct: 83 DRVDPRSK-----NVPGADIPNRPAGQR 105
>Os01g0766200 Zinc finger, RING-type domain containing protein
Length = 224
Score = 115 bits (289), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 54/108 (50%), Positives = 69/108 (63%), Gaps = 8/108 (7%)
Query: 219 VGASEEEPAERG---KSVAMFECNICFEMASEPVVTSCGHLFCWPCLYQWLHVHSTHKEC 275
VG S + G K FECNIC E+A +PVVT CGHLFCWPCLY+WLHVH+ +EC
Sbjct: 5 VGESSATAVDGGGGAKDSGSFECNICLELAQDPVVTLCGHLFCWPCLYEWLHVHAHSREC 64
Query: 276 PVCKGEVTEGNITPIYGRGNSTSDAEKKVAEEGNVSGPTIPPRPHGNR 323
PVCK + E + P+YGRG +++D + +V+G IP RP G R
Sbjct: 65 PVCKAGLEEEKLVPLYGRGKASTDPRSR-----SVAGVQIPSRPAGQR 107
>Os03g0678400 Zinc finger, RING-type domain containing protein
Length = 233
Score = 112 bits (280), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 52/107 (48%), Positives = 62/107 (57%), Gaps = 5/107 (4%)
Query: 217 AIVGASEEEPAERGKSVAMFECNICFEMASEPVVTSCGHLFCWPCLYQWLHVHSTHKECP 276
A VG S + FECNICFE+ EP+VT CGHLFCWPC+Y+WLH+H+ ECP
Sbjct: 3 ANVGESTSSGTNGDAAGGSFECNICFELPQEPIVTLCGHLFCWPCIYRWLHIHAHSPECP 62
Query: 277 VCKGEVTEGNITPIYGRGNSTSDAEKKVAEEGNVSGPTIPPRPHGNR 323
VCK V E + P+YGRG D K N+ IP RP G R
Sbjct: 63 VCKAVVEEDKLVPLYGRGKDRVDPRSK-----NIPEADIPNRPTGQR 104
>Os02g0639800 Zinc finger, RING-type domain containing protein
Length = 286
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 64/125 (51%), Gaps = 27/125 (21%)
Query: 234 AMFECNICFEMASEPVVTSCGHLFCWPCLYQWLH-----------VHSTHKE-CPVCKGE 281
F+CNIC + A+EPVVT CGHL+CWPC+Y+WLH ST + CPVCK
Sbjct: 47 GCFDCNICLDFATEPVVTLCGHLYCWPCIYEWLHPGGDDDGSNGDASSTRRRPCPVCKAA 106
Query: 282 VTEGNITPIYGRGNSTSDAEKKVAEEGNVSGPTIPPRPHGNRLESFRQKFHHLRPISRRL 341
V+ + P+YGRG S + SG IP RP +R RQ S RL
Sbjct: 107 VSPDTLVPLYGRGRGGSSKRAR-------SGSAIPRRPIVHREPVERQ--------SDRL 151
Query: 342 GEAHG 346
G+ G
Sbjct: 152 GDDDG 156
>Os04g0530500 Zinc finger, RING-type domain containing protein
Length = 253
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 65/122 (53%), Gaps = 21/122 (17%)
Query: 222 SEEEPAERGKSVAMFECNICFEMASEPVVTSCGHLFCWPCLYQWL--HVHST-------- 271
S + P G A F+CNIC + A+EPVVT CGHL+CWPC+Y+WL V ST
Sbjct: 25 SGDMPVTAGN--ACFDCNICLDFAAEPVVTLCGHLYCWPCIYEWLCPGVGSTASNNSSLA 82
Query: 272 HKECPVCKGEVTEGNITPIYGRGNSTSDAEKKVAEEGNVSGPTIPPRPHGNRLESFRQKF 331
++CPVCK ++ + P+YGRG S + ++G IP RP R Q
Sbjct: 83 RRQCPVCKATLSPDMLVPLYGRGGSLKKS---------LNGVPIPRRPTVQREAVEHQNT 133
Query: 332 HH 333
H+
Sbjct: 134 HN 135
>AK065326
Length = 253
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 65/122 (53%), Gaps = 21/122 (17%)
Query: 222 SEEEPAERGKSVAMFECNICFEMASEPVVTSCGHLFCWPCLYQWL--HVHST-------- 271
S + P G A F+CNIC + A+EPVVT CGHL+CWPC+Y+WL V ST
Sbjct: 25 SGDMPVTAGN--ACFDCNICLDFAAEPVVTLCGHLYCWPCIYEWLCPGVGSTASNNSSLA 82
Query: 272 HKECPVCKGEVTEGNITPIYGRGNSTSDAEKKVAEEGNVSGPTIPPRPHGNRLESFRQKF 331
++CPVCK ++ + P+YGRG S + ++G IP RP R Q
Sbjct: 83 RRQCPVCKATLSPDMLVPLYGRGGSLKKS---------LNGVPIPRRPTVQREAVEHQNT 133
Query: 332 HH 333
H+
Sbjct: 134 HN 135
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.134 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,846,521
Number of extensions: 678787
Number of successful extensions: 4321
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 4307
Number of HSP's successfully gapped: 9
Length of query: 562
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 456
Effective length of database: 11,501,117
Effective search space: 5244509352
Effective search space used: 5244509352
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 159 (65.9 bits)