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Os05g0470700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, RING-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.5 (0.0167) R2 : 0.0187
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.104 (0.0353) R2dN8 : 0.0241 R2N8 : 0.0187
σ : 0.315
deviance : 45.66
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
27.31 0.246 12.5 0.124 0.336 -0.514 -0.477 0.183 0.142 8.87 0.1742 99 -- --
27.34 0.244 12.5 0.114 0.33 -0.507 -0.311 -- 0.14 8.73 0.19 104 -- --
27.84 0.246 12.5 0.145 0.321 -0.483 -- 0.0786 0.138 8.39 0.1899 114 -- --
27.63 0.245 12.5 0.0945 0.314 -0.485 -- -- 0.135 8.55 0.19 108 -- --
29.98 0.255 12.5 0.177 -- -0.472 -- 0.0836 0.109 -- 0.1647 387 -- --
30.8 0.26 12.5 0.0696 0.502 -- 0.135 -- 0.101 2.85 -- -- -- --
30.86 0.26 12.5 0.0664 0.503 -- -- -- 0.101 2.88 -- -- -- --
29.85 0.254 12.5 0.182 -- -0.46 -- -- 0.12 -- 0.16 371 -- --
27.91 0.246 12.5 -- 0.314 -0.485 -- -- 0.135 8.55 0.19 108 -- --
45.45 0.315 12.5 0.0878 -- -- -- -- 0.114 -- -- -- -- --
30.98 0.26 12.5 -- 0.504 -- -- -- 0.0932 2.88 -- -- -- --
30.01 0.255 12.5 -- -- -0.44 -- -- 0.118 -- 0.17 363 -- --
45.66 0.315 12.5 -- -- -- -- -- 0.104 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 27.07 humidity 90.0 90 < th dose independent rect. 16 15
2 27.12 wind 1.0 10 > th dose dependent rect. 4 1
4 27.31 humidity 60.0 90 > th dose dependent rect. 18 11
9 27.40 temperature 25.0 90 > th dose dependent rect. 4 1
10 27.41 temperature 25.0 90 > th dose independent rect. 4 1
12 27.43 temperature 25.0 10 > th dose independent rect. 4 1
18 27.53 radiation 10.0 10 < th dose independent rect. 5 22
20 27.54 radiation 1.0 90 < th dose dependent sin 10 NA
23 27.55 radiation 1.0 90 < th dose dependent rect. 19 23
25 27.58 atmosphere 1000.0 10 > th dose independent rect. 5 23
29 27.63 humidity 90.0 10 < th dose independent rect. 4 1
31 27.63 temperature 25.0 30 > th dose dependent rect. 17 14
34 27.67 radiation 1.0 90 < th dose independent sin 11 NA
35 27.67 radiation 1.0 90 < th dose dependent rect. 17 23
38 27.69 radiation 1.0 90 < th dose dependent rect. 7 23
41 27.70 radiation 1.0 90 < th dose dependent rect. 11 21
43 27.71 radiation 1.0 90 < th dose dependent rect. 13 19
50 27.71 radiation 1.0 90 < th dose dependent rect. 13 23
51 27.71 radiation 1.0 90 < th dose dependent rect. 15 23
53 27.72 radiation 1.0 90 < th dose dependent no NA NA
68 27.75 temperature 25.0 10 > th dose independent rect. 2 3
77 27.77 radiation 1.0 90 < th dose dependent rect. 15 17
82 27.79 temperature 20.0 90 > th dose dependent rect. 16 10
88 27.80 wind 1.0 10 > th dose independent rect. 4 1
103 27.83 atmosphere 995.0 90 > th dose independent rect. 5 14
104 27.83 radiation 1.0 90 > th dose independent rect. 17 14
105 27.83 radiation 10.0 90 < th dose independent rect. 5 22
116 27.86 atmosphere 1005.0 14400 > th dose independent rect. 11 1
121 27.88 radiation 1.0 90 < th dose dependent rect. 17 15
129 27.90 radiation 1.0 90 < th dose independent rect. 19 22
133 27.91 radiation 10.0 90 < th dose independent rect. 5 5
139 27.93 atmosphere 1005.0 14400 < th dose independent rect. 11 1
148 27.95 humidity 90.0 90 < th dose dependent rect. 4 1
149 27.95 radiation 1.0 90 < th dose dependent rect. 19 13
169 27.99 radiation 20.0 10 < th dose dependent rect. 6 4
171 27.99 humidity 60.0 10 > th dose dependent rect. 19 11
176 28.00 temperature 20.0 10 > th dose dependent rect. 16 11
183 28.02 radiation 30.0 90 < th dose dependent rect. 5 5
191 28.03 radiation 10.0 10 < th dose independent rect. 6 5
202 28.05 radiation 1.0 90 > th dose independent sin 11 NA
203 28.05 precipitation 0.1 10 < th dose independent rect. 4 1
206 28.05 atmosphere 1015.0 10 < th dose dependent rect. 4 1
207 28.05 precipitation 0.1 10 < th dose dependent rect. 4 1
222 28.08 wind 9.0 10 < th dose independent rect. 4 1
223 28.08 temperature 10.0 10 > th dose independent rect. 4 1
225 28.08 temperature 30.0 10 < th dose independent rect. 4 1
226 28.08 humidity 50.0 10 > th dose independent rect. 4 1
229 28.08 atmosphere 995.0 10 > th dose independent rect. 4 1
231 28.08 atmosphere 1010.0 10 < th dose independent rect. 4 1
233 28.08 radiation 1.0 10 < th dose independent rect. 4 1
240 28.08 temperature 10.0 10 > th dose independent rect. 5 23
241 28.08 wind 3.0 10 < th dose dependent rect. 4 1
242 28.08 atmosphere 1005.0 10 > th dose dependent rect. 4 1
244 28.08 radiation 1.0 10 < th dose dependent rect. 4 1
255 28.09 humidity 80.0 90 > th dose independent rect. 19 10
256 28.09 humidity 50.0 10 > th dose dependent rect. 4 1
259 28.10 temperature 10.0 10 > th dose dependent rect. 4 1
275 28.12 atmosphere 995.0 10 > th dose dependent rect. 4 1
283 28.14 precipitation 0.1 90 < th dose independent rect. 5 14
287 28.14 precipitation 0.1 90 < th dose dependent rect. 5 14
290 28.15 radiation 1.0 90 < th dose independent rect. 19 12
297 28.15 radiation 1.0 90 < th dose dependent rect. 1 23
300 28.16 radiation 1.0 30 < th dose dependent sin 5 NA
305 28.17 wind 3.0 10 < th dose independent rect. 4 1
311 28.17 temperature 25.0 720 > th dose dependent rect. 14 3
312 28.18 humidity 80.0 4320 > th dose independent rect. 8 1
332 28.19 temperature 30.0 10 < th dose dependent rect. 4 1
342 28.21 radiation 1.0 30 < th dose independent sin 6 NA
345 28.21 humidity 90.0 10 < th dose dependent rect. 4 1
353 28.22 radiation 1.0 90 > th dose independent rect. 16 23
360 28.22 temperature 10.0 30 > th dose dependent rect. 5 22
362 28.23 humidity 80.0 10 > th dose independent rect. 6 5
388 28.24 temperature 25.0 10 > th dose dependent sin 11 NA
404 28.25 radiation 10.0 10 < th dose independent rect. 6 17
413 28.25 humidity 90.0 30 < th dose dependent rect. 17 14
415 28.25 temperature 20.0 720 > th dose dependent rect. 13 19
439 28.27 radiation 30.0 30 < th dose dependent rect. 5 23
457 28.29 radiation 1.0 90 < th dose independent rect. 7 23
466 28.29 radiation 1.0 90 < th dose dependent rect. 3 23
470 28.30 radiation 10.0 10 < th dose independent rect. 6 13
484 28.32 temperature 20.0 4320 > th dose independent rect. 21 1
488 28.32 radiation 1.0 90 < th dose independent rect. 17 23
498 28.34 radiation 1.0 90 < th dose independent rect. 11 20
505 28.35 radiation 1.0 90 < th dose independent rect. 13 17
541 28.37 temperature 20.0 4320 < th dose independent rect. 21 1
564 28.39 wind 7.0 1440 < th dose independent rect. 5 1
566 28.39 temperature 10.0 1440 > th dose independent rect. 5 1
569 28.39 temperature 30.0 1440 < th dose independent rect. 5 1
573 28.39 humidity 50.0 1440 > th dose independent rect. 5 1
582 28.39 atmosphere 995.0 1440 > th dose independent rect. 5 1
583 28.39 atmosphere 1015.0 1440 < th dose independent rect. 5 1
584 28.39 radiation 20.0 1440 < th dose independent rect. 5 1
601 28.39 temperature 10.0 1440 > th dose independent rect. 6 23
614 28.40 radiation 1.0 90 > th dose independent no NA NA
615 28.40 radiation 1.0 90 < th dose independent no NA NA
617 28.40 temperature 20.0 4320 > th dose independent rect. 20 3
621 28.40 radiation 1.0 90 > th dose independent rect. 4 15
676 28.40 radiation 1.0 90 < th dose independent rect. 15 23
678 28.40 humidity 60.0 10 > th dose dependent sin 12 NA
692 28.40 temperature 20.0 720 > th dose dependent rect. 19 22
699 28.41 temperature 10.0 90 > th dose independent rect. 19 10
700 28.41 temperature 30.0 90 < th dose independent rect. 19 10
701 28.41 humidity 50.0 90 > th dose independent rect. 19 10
703 28.41 atmosphere 995.0 90 > th dose independent rect. 19 10
708 28.41 temperature 10.0 90 > th dose independent rect. 5 14
709 28.41 atmosphere 1015.0 90 < th dose independent rect. 5 14
723 28.42 wind 1.0 90 > th dose independent rect. 5 14
729 28.42 radiation 1.0 90 < th dose independent rect. 15 16
750 28.43 temperature 20.0 4320 < th dose independent rect. 20 3
753 28.43 wind 9.0 90 < th dose independent rect. 19 10
763 28.43 precipitation 0.1 10 < th dose independent rect. 5 23
764 28.43 temperature 20.0 1440 > th dose dependent rect. 18 3
768 28.43 temperature 20.0 270 > th dose dependent rect. 14 10
775 28.43 precipitation 0.1 10 < th dose dependent rect. 5 23
791 28.45 humidity 80.0 4320 < th dose independent rect. 8 1
795 28.45 humidity 90.0 90 < th dose independent rect. 16 10
798 28.45 temperature 25.0 4320 > th dose dependent rect. 5 3
801 28.45 temperature 20.0 1440 > th dose dependent rect. 16 6
851 28.48 radiation 10.0 90 < th dose independent rect. 5 14
852 28.48 radiation 1.0 90 < th dose independent rect. 17 14
891 28.49 wind 7.0 4320 > th dose dependent rect. 8 1
909 28.50 temperature 30.0 1440 < th dose dependent rect. 20 1
926 28.51 humidity 80.0 720 < th dose independent rect. 14 3
928 28.51 humidity 80.0 90 > th dose independent rect. 5 5
931 28.51 radiation 20.0 90 < th dose independent rect. 16 18
943 28.51 temperature 20.0 720 > th dose dependent rect. 5 21
967 28.53 radiation 1.0 90 > th dose independent rect. 5 2
985 28.53 temperature 25.0 1440 > th dose dependent sin 14 NA