Os03g0678400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os03g0678400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 64.67 | 0.378 | 11 | -0.215 | 0.39 | 0.97 | 1.08 | -0.945 | 0.382 | 13.3 | 21.2 | 743 | -- | -- |
| 66.93 | 0.381 | 10.9 | -0.0195 | 0.4 | 1.04 | 1.23 | -- | 0.415 | 13 | 21.3 | 852 | -- | -- |
| 68.11 | 0.384 | 11 | -0.234 | 0.447 | 0.938 | -- | -1.1 | 0.408 | 14.6 | 21.4 | 753 | -- | -- |
| 71.73 | 0.394 | 11 | 0.0157 | 0.472 | 1.07 | -- | -- | 0.421 | 14.9 | 21.2 | 976 | -- | -- |
| 76.35 | 0.407 | 11 | -0.264 | -- | 0.839 | -- | -1.34 | 0.336 | -- | 22.05 | 620 | -- | -- |
| 103.81 | 0.478 | 10.9 | 0.374 | 0.239 | -- | 1.47 | -- | 0.705 | 12.8 | -- | -- | -- | -- |
| 107.68 | 0.486 | 10.9 | 0.436 | 0.403 | -- | -- | -- | 0.719 | 16.3 | -- | -- | -- | -- |
| 82.12 | 0.422 | 10.9 | 0.137 | -- | 0.85 | -- | -- | 0.439 | -- | 21.95 | 562 | -- | -- |
| 71.73 | 0.394 | 11 | -- | 0.473 | 1.08 | -- | -- | 0.425 | 15 | 21.25 | 976 | -- | -- |
| 116.43 | 0.504 | 10.9 | 0.42 | -- | -- | -- | -- | 0.708 | -- | -- | -- | -- | -- |
| 112.69 | 0.497 | 10.9 | -- | 0.394 | -- | -- | -- | 0.67 | 16.3 | -- | -- | -- | -- |
| 81.56 | 0.421 | 10.9 | -- | -- | 0.976 | -- | -- | 0.438 | -- | 21.3 | 586 | -- | -- |
| 121.08 | 0.514 | 10.9 | -- | -- | -- | -- | -- | 0.661 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 54.61 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 13 |
| 2 | 54.66 | temperature | 25 | 720 | < th | dose dependent | rect. | 22 | 11 |
| 7 | 54.97 | temperature | 25 | 720 | < th | dose dependent | sin | 8 | NA |
| 23 | 55.90 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 24 | 56.01 | temperature | 15 | 720 | > th | dose dependent | rect. | 2 | 7 |
| 36 | 56.37 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 64 | 56.94 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 99 | 57.75 | temperature | 10 | 720 | > th | dose dependent | sin | 7 | NA |
| 130 | 58.55 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 142 | 58.77 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 19 |
| 189 | 59.65 | temperature | 20 | 720 | > th | dose independent | sin | 7 | NA |
| 203 | 59.86 | temperature | 20 | 720 | > th | dose independent | rect. | 2 | 7 |
| 211 | 59.97 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 10 |
| 217 | 60.05 | temperature | 20 | 720 | < th | dose independent | rect. | 22 | 11 |
| 219 | 60.13 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 14 |
| 251 | 60.53 | temperature | 20 | 720 | < th | dose independent | sin | 8 | NA |
| 359 | 61.81 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 3 |
| 743 | 66.09 | temperature | 15 | 30 | > th | dose dependent | rect. | 5 | 15 |
| 828 | 66.99 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 15 |
| 833 | 67.03 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 1 |
| 854 | 67.21 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 916 | 67.83 | temperature | 15 | 270 | > th | dose dependent | rect. | 2 | 20 |
| 925 | 67.89 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 21 |
| 931 | 67.96 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 990 | 68.49 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 6 |