BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0678400 Os03g0678400|AK068558
(233 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G23780.1 | chr2:10123551-10124234 REVERSE LENGTH=228 186 1e-47
AT1G19310.1 | chr1:6676424-6677104 REVERSE LENGTH=227 179 8e-46
AT1G74990.1 | chr1:28159837-28160250 REVERSE LENGTH=138 132 1e-31
AT4G03510.1 | chr4:1557905-1558654 REVERSE LENGTH=250 100 7e-22
AT4G27470.1 | chr4:13735576-13736307 FORWARD LENGTH=244 100 7e-22
AT4G28270.1 | chr4:14007614-14008195 REVERSE LENGTH=194 95 3e-20
AT3G58030.1 | chr3:21485527-21486837 FORWARD LENGTH=437 94 7e-20
AT2G42030.1 | chr2:17539069-17540346 REVERSE LENGTH=426 92 2e-19
AT2G44410.1 | chr2:18328873-18330114 FORWARD LENGTH=414 82 3e-16
AT2G26350.1 | chr2:11217767-11220415 REVERSE LENGTH=382 59 2e-09
AT3G26730.1 | chr3:9823770-9827270 FORWARD LENGTH=773 51 5e-07
AT3G20010.1 | chr3:6971352-6976340 FORWARD LENGTH=1048 48 3e-06
>AT2G23780.1 | chr2:10123551-10124234 REVERSE LENGTH=228
Length = 227
Score = 186 bits (471), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 109/223 (48%), Positives = 128/223 (57%), Gaps = 23/223 (10%)
Query: 16 DAAGGSFECNICFELPQEPIVTLCGHLFCWPCIYRWLHIHAHSPECPVCKAVVEEDKLVP 75
+ GG FECNICFEL Q+PIVTLCGHLFCWPC+YRWLH H+HS ECPVCKAVV++DKLVP
Sbjct: 20 NDQGGDFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQDDKLVP 79
Query: 76 LYGRGKDRVDPRSKNIPEADIPNRPTGQRPATAPQXXXXXXXXXXXXXXXXXXWFMGTGV 135
LYGRGK++ DPRSK P IPNRPTGQRP TA MG +
Sbjct: 80 LYGRGKNQTDPRSKRYPGLRIPNRPTGQRPETAAPPPQPEAASNFFNYGIG---LMGGIM 136
Query: 136 P-LANARWGNYAFSAAFGGLFP-MLSFQVHGFPDANPYAQPAXXXXXXXXXXXXXXXXXX 193
P +A R+GN FS FGGL P + +FQ HGF DA Y
Sbjct: 137 PMMATTRFGN--FSMGFGGLLPSLFNFQFHGFHDATLYGSTP----------GYPYGGYH 184
Query: 194 XXXXXVPRQGPLEQP-----QQADIYLKALLIMVGFLVVASLL 231
VP +G E+P Q+D +LK +L VG VV L+
Sbjct: 185 NGFRGVPPRGQ-ERPMARGGNQSDAFLKNILFFVGICVVIFLI 226
>AT1G19310.1 | chr1:6676424-6677104 REVERSE LENGTH=227
Length = 226
Score = 179 bits (455), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 88/155 (56%), Positives = 106/155 (68%), Gaps = 4/155 (2%)
Query: 22 FECNICFELPQEPIVTLCGHLFCWPCIYRWLHIHAHSPECPVCKAVVEEDKLVPLYGRGK 81
FECNIC +L Q+PIVTLCGHLFCWPC+Y+WLH+H+ S +CPVCKAV+EED+LVPLYGRGK
Sbjct: 21 FECNICLDLAQDPIVTLCGHLFCWPCLYKWLHLHSQSKDCPVCKAVIEEDRLVPLYGRGK 80
Query: 82 DRVDPRSKNIPEADIPNRPTGQRPATAPQXXXXXXXXXXXXXXXXXXWFMGTGVPLANAR 141
DPRSK+IP ++PNRP+GQRP TA + G P+A+AR
Sbjct: 81 SSADPRSKSIPGLEVPNRPSGQRPETA---QPPDPNHGFAHHHGFGGFMGGFAAPMASAR 137
Query: 142 WGNYAFSAAFGGLFPML-SFQVHGFPDANPYAQPA 175
+GN SAAFGGL P L + HGFPDA Y A
Sbjct: 138 FGNVTLSAAFGGLIPSLFNLHFHGFPDAAMYGAAA 172
>AT1G74990.1 | chr1:28159837-28160250 REVERSE LENGTH=138
Length = 137
Score = 132 bits (333), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 59/93 (63%), Positives = 67/93 (72%)
Query: 16 DAAGGSFECNICFELPQEPIVTLCGHLFCWPCIYRWLHIHAHSPECPVCKAVVEEDKLVP 75
D A +F CNIC EL +EPIVTLCGHLFCWPC+Y+WLH H+ S CPVCKA+V+ED LVP
Sbjct: 11 DDASNNFGCNICLELAREPIVTLCGHLFCWPCLYKWLHYHSKSNHCPVCKALVKEDTLVP 70
Query: 76 LYGRGKDRVDPRSKNIPEADIPNRPTGQRPATA 108
LYG GK DPRSK +PNRP R TA
Sbjct: 71 LYGMGKPSSDPRSKLNSGVTVPNRPAATRTETA 103
>AT4G03510.1 | chr4:1557905-1558654 REVERSE LENGTH=250
Length = 249
Score = 100 bits (249), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 47/102 (46%), Positives = 60/102 (58%), Gaps = 12/102 (11%)
Query: 9 TSSGTNGDAAGGSFECNICFELPQEPIVTLCGHLFCWPCIYRWLHIHAHSP--------E 60
T S + D +F+CNIC + QEP+VTLCGHLFCWPCI++WL + + S +
Sbjct: 33 TVSVPSDDTDDSNFDCNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTSDEYQRHRQ 92
Query: 61 CPVCKAVVEEDKLVPLYGRGKDRVDPRSKNIPEADIPNRPTG 102
CPVCK+ V LVPLYGRG+ KN +P RP G
Sbjct: 93 CPVCKSKVSHSTLVPLYGRGRCTTQEEGKN----SVPKRPVG 130
>AT4G27470.1 | chr4:13735576-13736307 FORWARD LENGTH=244
Length = 243
Score = 100 bits (249), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 47/104 (45%), Positives = 60/104 (57%), Gaps = 12/104 (11%)
Query: 9 TSSGTNGDA-AGGSFECNICFELPQEPIVTLCGHLFCWPCIYRWLHIH-------AHSPE 60
T++ T G A G F+CNIC + +P+VTLCGHLFCWPCIY+WLH+ H
Sbjct: 28 TTAPTAGQANESGCFDCNICLDTAHDPVVTLCGHLFCWPCIYKWLHVQLSSVSVDQHQNN 87
Query: 61 CPVCKAVVEEDKLVPLYGRG----KDRVDPRSKNIPEADIPNRP 100
CPVCK+ + LVPLYGRG + ++ DIP RP
Sbjct: 88 CPVCKSNITITSLVPLYGRGMSSPSSTFGSKKQDALSTDIPRRP 131
>AT4G28270.1 | chr4:14007614-14008195 REVERSE LENGTH=194
Length = 193
Score = 95.1 bits (235), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 66/109 (60%), Gaps = 19/109 (17%)
Query: 7 ESTSSGTNGDAAGGSFECNICFELPQEPIVTLCGHLFCWPCIYRWLHIHAHS-------- 58
E T +GG F+CNIC + ++P+VTLCGHLFCWPCI++W + +S
Sbjct: 4 EKDEDDTTLVDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYD 63
Query: 59 -----PECPVCKAVVEEDKLVPLYGRGKDRVDPRSKNIPEADIPNRPTG 102
P+CPVCK+ V E LVP+YGRG+ P+S +++P+RPTG
Sbjct: 64 HKREPPKCPVCKSDVSEATLVPIYGRGQKA--PQSG----SNVPSRPTG 106
>AT3G58030.1 | chr3:21485527-21486837 FORWARD LENGTH=437
Length = 436
Score = 93.6 bits (231), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 43/98 (43%), Positives = 63/98 (64%), Gaps = 13/98 (13%)
Query: 10 SSGTNGDAAGGSFECNICFELPQEPIVTLCGHLFCWPCIYRWLHIHAHSPECPVCKAVVE 69
SSG++G+ F+CNIC +L +EP++T CGHL+CWPC+Y+WL I + + ECPVCK V
Sbjct: 129 SSGSDGNF----FDCNICLDLSKEPVLTCCGHLYCWPCLYQWLQI-SDAKECPVCKGEVT 183
Query: 70 EDKLVPLYGRGKDRVDPRSKNIPEA---DIPNRPTGQR 104
+ P+YGRG + + I E+ +P RP +R
Sbjct: 184 SKTVTPIYGRGNHK-----REIEESLDTKVPMRPHARR 216
>AT2G42030.1 | chr2:17539069-17540346 REVERSE LENGTH=426
Length = 425
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 57/89 (64%), Gaps = 3/89 (3%)
Query: 19 GGSFECNICFELPQEPIVTLCGHLFCWPCIYRWLHIHAHSPECPVCKAVVEEDKLVPLYG 78
G F+C IC +L ++P+VT CGHL+CW C+Y+WL + + + ECPVCK V + P+YG
Sbjct: 136 GSFFDCYICLDLSKDPVVTNCGHLYCWSCLYQWLQV-SEAKECPVCKGEVSVKTVTPIYG 194
Query: 79 RGKDRVDPRSKNIPEADIPNRPTGQRPAT 107
RG + + S+ + IP+RP +R +
Sbjct: 195 RGIQKRE--SEEVSNTKIPSRPQARRTES 221
>AT2G44410.1 | chr2:18328873-18330114 FORWARD LENGTH=414
Length = 413
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 44/64 (68%)
Query: 19 GGSFECNICFELPQEPIVTLCGHLFCWPCIYRWLHIHAHSPECPVCKAVVEEDKLVPLYG 78
GG F+CNIC E ++PI+T CGHLFCW C Y+ I+ + ECPVC V + +++P+YG
Sbjct: 120 GGFFDCNICLEKAEDPILTCCGHLFCWGCFYQLPLIYLNIKECPVCDGEVTDAEVIPIYG 179
Query: 79 RGKD 82
G D
Sbjct: 180 NGDD 183
>AT2G26350.1 | chr2:11217767-11220415 REVERSE LENGTH=382
Length = 381
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 8 STSSGTNGDAAGGSFECNICFELPQEPIVTLCGHLFCWPCIYRWLHIHAHSPECPVCKAV 67
STS T+ +A G +C +C Q P T CGH+FCW CI W + ECP+C+
Sbjct: 314 STSDSTSTEAVG---KCTLCLSTRQHPTATPCGHVFCWSCIMEWCN---EKQECPLCRTP 367
Query: 68 VEEDKLVPLY 77
LV LY
Sbjct: 368 NTHSSLVCLY 377
>AT3G26730.1 | chr3:9823770-9827270 FORWARD LENGTH=773
Length = 772
Score = 51.2 bits (121), Expect = 5e-07, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 24/100 (24%)
Query: 23 ECNICFELPQEPIVTLCGHLFCWPCIYRWL--HIHAHSPE----CPVCKAVVEEDKLVPL 76
+C IC E P P +T CGH+FC+PCI ++L + H + CP+C ++ +L +
Sbjct: 244 QCPICLEYPLCPQITSCGHIFCFPCILQYLLTGVDNHKVDCFKRCPLCFVMISPRELYTV 303
Query: 77 Y------------------GRGKDRVDPRSKNIPEADIPN 98
Y R KD P KN + +PN
Sbjct: 304 YIENVKQYSVGDPIEFVLLTRKKDSFAPTRKNEHDLAVPN 343
>AT3G20010.1 | chr3:6971352-6976340 FORWARD LENGTH=1048
Length = 1047
Score = 48.1 bits (113), Expect = 3e-06, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 22 FECNICFELPQEPIVTLCGHLFCWPCIYRWLHIHAHSPECPVCKAVVEED 71
+ECN E P++P+VTLCGH+FC+ C+ ++ ++ P CK + D
Sbjct: 752 YECN---EPPEKPVVTLCGHIFCYECVLEYITGDENTCPVPRCKQQLARD 798
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.139 0.463
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,588,302
Number of extensions: 171016
Number of successful extensions: 776
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 794
Number of HSP's successfully gapped: 13
Length of query: 233
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 138
Effective length of database: 8,502,049
Effective search space: 1173282762
Effective search space used: 1173282762
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 110 (47.0 bits)