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Os12g0636000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, RING-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.82 (0.0148) R2 : 0.465
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.746 (0.0381) R2dC : 0.453 R2C : 0.449
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.101 (0.0311) R2dN8 : 0.0159 R2N8 : 0.0118
σ : 0.279
deviance : 35.61
__
_____
C
peak time of C : 7.64
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
28.71 0.252 9.83 0.295 0.713 -0.32 -0.182 -0.637 0.12 5.69 1.484 65 -- --
30.97 0.259 9.84 0.288 0.731 -0.409 -0.381 -- 0.111 4.97 1.667 64 -- --
28.79 0.25 9.83 0.294 0.72 -0.326 -- -0.649 0.12 5.65 1.49 67 -- --
31.32 0.261 9.83 0.29 0.709 -0.333 -- -- 0.116 5.58 1.623 66 -- --
50.89 0.332 9.84 0.311 -- -0.315 -- -0.521 0.126 -- 4.85 3 -- --
33.02 0.269 9.82 0.297 0.742 -- 0.252 -- 0.135 7.76 -- -- -- --
33.19 0.27 9.82 0.303 0.744 -- -- -- 0.135 7.67 -- -- -- --
51.88 0.335 9.84 0.268 -- -0.321 -- -- 0.133 -- 0.12 3 -- --
33.43 0.269 9.83 -- 0.695 -0.343 -- -- 0.0883 5.5 1.27 54 -- --
62.96 0.371 9.83 0.313 -- -- -- -- 0.145 -- -- -- -- --
35.61 0.279 9.82 -- 0.746 -- -- -- 0.101 7.64 -- -- -- --
54.22 0.343 9.84 -- -- -0.333 -- -- 0.112 -- 0.12 3 -- --
65.54 0.378 9.84 -- -- -- -- -- 0.111 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 25.78 temperature 10.0 720 > th dose dependent rect. 4 4
13 26.88 temperature 25.0 270 < th dose independent rect. 15 16
16 26.92 temperature 30.0 720 < th dose dependent rect. 24 10
30 27.10 temperature 25.0 720 < th dose dependent rect. 3 5
47 27.28 temperature 25.0 270 < th dose independent rect. 7 6
50 27.29 radiation 20.0 30 < th dose dependent sin 11 NA
55 27.33 temperature 25.0 720 < th dose dependent rect. 5 2
60 27.37 temperature 15.0 270 > th dose independent rect. 19 13
71 27.45 radiation 10.0 720 < th dose independent rect. 17 10
72 27.45 temperature 15.0 30 > th dose independent rect. 21 14
83 27.53 temperature 10.0 30 > th dose dependent rect. 3 8
85 27.54 temperature 15.0 720 > th dose independent rect. 19 5
92 27.58 precipitation 0.1 720 < th dose independent rect. 21 18
93 27.58 precipitation 0.1 720 < th dose dependent rect. 21 18
96 27.60 temperature 15.0 720 > th dose independent rect. 21 3
97 27.60 temperature 15.0 720 > th dose independent rect. 5 10
98 27.60 precipitation 0.1 720 < th dose independent rect. 3 14
99 27.60 precipitation 0.1 720 < th dose dependent rect. 3 14
105 27.63 temperature 25.0 720 < th dose independent rect. 7 1
111 27.65 wind 7.0 270 < th dose independent rect. 17 11
115 27.66 wind 5.0 270 < th dose independent rect. 15 12
123 27.69 temperature 15.0 720 > th dose independent rect. 3 14
131 27.70 temperature 30.0 270 < th dose dependent rect. 7 7
138 27.72 temperature 30.0 30 < th dose independent rect. 11 5
141 27.72 wind 1.0 10 > th dose independent rect. 16 19
152 27.76 precipitation 0.1 720 < th dose independent rect. 5 10
153 27.76 temperature 15.0 720 > th dose independent rect. 19 22
156 27.76 precipitation 0.1 720 < th dose dependent rect. 5 10
157 27.77 temperature 30.0 270 < th dose independent rect. 11 1
158 27.77 precipitation 0.1 720 < th dose independent rect. 3 6
165 27.77 precipitation 0.1 720 < th dose dependent rect. 3 6
179 27.83 temperature 25.0 30 > th dose independent rect. 1 10
183 27.84 temperature 25.0 30 > th dose independent rect. 4 7
189 27.85 temperature 20.0 720 > th dose independent rect. 5 3
193 27.86 radiation 10.0 270 > th dose independent rect. 11 1
200 27.87 temperature 10.0 720 > th dose dependent rect. 21 10
202 27.89 wind 1.0 10 > th dose independent rect. 1 10
207 27.91 wind 9.0 720 < th dose independent rect. 15 14
211 27.91 radiation 1.0 720 < th dose dependent rect. 24 8
219 27.92 temperature 10.0 720 > th dose dependent rect. 23 9
221 27.93 wind 9.0 720 < th dose independent rect. 15 6
224 27.93 precipitation 0.1 720 < th dose independent rect. 12 19
227 27.93 precipitation 0.1 720 < th dose dependent rect. 12 19
235 27.95 temperature 15.0 720 > th dose independent rect. 20 20
244 27.97 wind 1.0 10 > th dose independent rect. 14 21
247 27.98 radiation 30.0 270 < th dose independent rect. 19 13
248 27.98 precipitation 0.1 270 < th dose independent rect. 19 13
253 27.98 precipitation 0.1 270 < th dose dependent rect. 19 13
261 28.00 radiation 40.0 720 < th dose dependent rect. 17 10
263 28.01 wind 7.0 720 < th dose independent rect. 17 2
265 28.01 wind 9.0 270 < th dose independent rect. 4 13
270 28.02 radiation 40.0 720 < th dose independent rect. 3 6
273 28.02 precipitation 0.1 270 < th dose independent rect. 12 23
276 28.02 precipitation 0.1 270 < th dose dependent rect. 12 23
287 28.04 atmosphere 1015.0 720 < th dose independent rect. 3 14
288 28.04 temperature 15.0 30 > th dose independent rect. 16 19
300 28.06 atmosphere 1015.0 720 < th dose independent rect. 3 6
305 28.07 humidity 60.0 30 > th dose independent rect. 21 14
306 28.07 radiation 40.0 10 < th dose independent rect. 21 14
313 28.08 atmosphere 1015.0 720 < th dose independent rect. 5 10
314 28.08 temperature 10.0 720 > th dose independent rect. 15 14
317 28.09 atmosphere 995.0 720 > th dose independent rect. 17 10
319 28.09 precipitation 0.1 720 < th dose independent rect. 12 21
320 28.09 temperature 30.0 720 < th dose dependent sin 6 NA
321 28.09 temperature 30.0 270 < th dose dependent rect. 9 1
324 28.09 precipitation 0.1 720 < th dose dependent rect. 12 21
331 28.11 radiation 40.0 720 < th dose independent rect. 15 14
332 28.11 precipitation 0.1 30 < th dose independent rect. 21 14
335 28.11 precipitation 0.1 30 < th dose dependent rect. 21 14
336 28.12 temperature 20.0 720 < th dose independent rect. 5 2
344 28.13 temperature 25.0 270 < th dose independent sin 14 NA
346 28.13 temperature 20.0 720 < th dose independent rect. 3 4
348 28.13 temperature 10.0 720 > th dose independent rect. 17 10
357 28.14 radiation 10.0 720 < th dose independent rect. 17 2
366 28.15 wind 9.0 720 < th dose independent rect. 3 6
367 28.15 temperature 10.0 720 > th dose independent rect. 3 6
368 28.15 humidity 50.0 720 > th dose independent rect. 3 6
369 28.15 atmosphere 995.0 720 > th dose independent rect. 3 6
371 28.15 temperature 10.0 720 > th dose independent rect. 9 18
372 28.15 temperature 15.0 720 > th dose independent rect. 7 22
375 28.16 radiation 1.0 10 > th dose independent rect. 11 5
376 28.16 temperature 10.0 1440 > th dose independent rect. 12 10
380 28.16 temperature 10.0 1440 > th dose independent rect. 22 14
383 28.16 atmosphere 995.0 1440 > th dose independent rect. 22 14
389 28.17 radiation 1.0 90 < th dose independent sin 10 NA
398 28.18 temperature 10.0 720 > th dose independent rect. 15 6
405 28.19 temperature 10.0 270 > th dose independent rect. 8 11
406 28.19 atmosphere 1015.0 270 < th dose independent rect. 8 11
409 28.19 humidity 50.0 270 > th dose independent rect. 19 13
411 28.19 atmosphere 995.0 270 > th dose independent rect. 19 13
419 28.20 temperature 30.0 10 < th dose independent rect. 11 3
427 28.21 temperature 10.0 30 > th dose independent rect. 11 10
429 28.21 atmosphere 1015.0 30 < th dose independent rect. 11 10
432 28.21 atmosphere 995.0 30 > th dose independent rect. 21 14
433 28.21 wind 9.0 270 < th dose independent rect. 12 23
440 28.22 atmosphere 995.0 30 > th dose independent rect. 11 10
443 28.22 wind 9.0 30 < th dose independent rect. 21 14
452 28.23 wind 9.0 720 < th dose independent rect. 5 10
453 28.23 wind 9.0 270 < th dose independent rect. 19 13
458 28.24 precipitation 0.1 720 < th dose independent rect. 19 5
461 28.24 wind 1.0 10 > th dose independent rect. 12 23
463 28.24 precipitation 0.1 720 < th dose dependent rect. 19 5
464 28.24 wind 9.0 270 < th dose dependent rect. 16 11
465 28.24 radiation 40.0 270 < th dose dependent rect. 16 12
472 28.26 precipitation 0.1 720 < th dose independent rect. 12 12
476 28.26 precipitation 0.1 720 < th dose dependent rect. 12 12
480 28.27 atmosphere 1015.0 720 < th dose independent rect. 15 6
487 28.28 wind 1.0 270 > th dose independent rect. 11 1
488 28.28 wind 1.0 30 > th dose independent rect. 11 10
491 28.28 radiation 40.0 10 < th dose independent rect. 16 19
495 28.28 atmosphere 995.0 270 > th dose dependent rect. 23 4
502 28.29 precipitation 0.1 10 < th dose independent rect. 11 10
507 28.29 precipitation 0.1 10 < th dose dependent rect. 11 10
511 28.30 radiation 40.0 720 < th dose independent rect. 15 6
519 28.30 wind 1.0 10 > th dose independent rect. 19 16
520 28.30 temperature 15.0 30 > th dose independent rect. 19 16
521 28.30 radiation 1.0 10 > th dose dependent rect. 11 5
525 28.31 temperature 10.0 270 > th dose independent rect. 11 1
526 28.31 atmosphere 995.0 270 > th dose independent rect. 11 1
527 28.31 atmosphere 1015.0 270 < th dose independent rect. 11 1
528 28.31 precipitation 0.1 270 < th dose independent rect. 11 1
533 28.31 wind 1.0 10 > th dose independent rect. 21 14
534 28.31 temperature 10.0 270 > th dose independent rect. 12 23
536 28.31 precipitation 0.1 270 < th dose dependent rect. 11 1
553 28.33 temperature 30.0 30 < th dose independent rect. 21 14
560 28.35 humidity 60.0 720 > th dose independent rect. 19 5
563 28.35 wind 7.0 30 < th dose independent rect. 16 19
564 28.35 radiation 30.0 10 < th dose independent rect. 14 21
572 28.36 temperature 30.0 720 < th dose independent rect. 19 5
574 28.36 atmosphere 995.0 720 > th dose independent rect. 19 5
575 28.36 radiation 1.0 720 < th dose independent rect. 19 5
582 28.36 humidity 50.0 720 > th dose independent rect. 17 10
585 28.36 atmosphere 1015.0 30 < th dose independent rect. 11 16
586 28.36 temperature 10.0 720 > th dose independent rect. 24 19
590 28.36 radiation 1.0 720 < th dose dependent rect. 19 5
596 28.36 radiation 1.0 10 > th dose dependent rect. 11 8
611 28.37 wind 9.0 720 < th dose independent rect. 21 18
613 28.37 humidity 60.0 30 > th dose independent rect. 16 19
635 28.39 temperature 15.0 720 > th dose independent rect. 12 12
640 28.39 radiation 1.0 270 > th dose dependent rect. 11 1
649 28.40 wind 9.0 720 < th dose independent rect. 19 5
652 28.40 temperature 10.0 1440 > th dose independent rect. 4 8
655 28.40 atmosphere 995.0 1440 > th dose independent rect. 4 8
659 28.40 temperature 10.0 1440 > th dose independent rect. 12 16
667 28.41 humidity 50.0 270 > th dose independent rect. 11 1
672 28.41 wind 9.0 30 < th dose independent rect. 11 10
681 28.42 temperature 10.0 720 > th dose independent rect. 7 5
682 28.42 atmosphere 995.0 720 > th dose independent rect. 7 5
683 28.42 atmosphere 1015.0 720 < th dose independent rect. 7 5
685 28.42 precipitation 0.1 270 < th dose independent rect. 8 11
688 28.42 temperature 10.0 720 > th dose independent rect. 12 19
695 28.42 precipitation 0.1 270 < th dose dependent rect. 8 11
719 28.45 temperature 30.0 270 < th dose independent rect. 23 14
720 28.45 wind 9.0 720 < th dose independent rect. 9 18
721 28.45 precipitation 0.1 30 < th dose independent rect. 16 19
726 28.45 precipitation 0.1 30 < th dose dependent rect. 16 19
730 28.46 precipitation 0.1 720 < th dose independent rect. 7 5
732 28.46 atmosphere 1015.0 270 < th dose independent rect. 23 13
733 28.46 wind 1.0 10 > th dose independent rect. 16 17
734 28.46 wind 9.0 720 < th dose independent rect. 24 19
737 28.46 precipitation 0.1 720 < th dose dependent rect. 7 5
738 28.47 wind 9.0 270 < th dose independent rect. 11 1
740 28.47 temperature 10.0 1440 > th dose independent rect. 12 5
749 28.47 temperature 10.0 1440 > th dose independent rect. 17 19
758 28.48 atmosphere 995.0 30 > th dose independent rect. 11 5
771 28.48 radiation 1.0 90 < th dose dependent rect. 23 23
772 28.49 wind 1.0 30 > th dose independent rect. 11 5
778 28.49 temperature 15.0 720 > th dose independent rect. 7 13
784 28.49 temperature 10.0 90 > th dose dependent rect. 5 12
786 28.50 radiation 20.0 720 < th dose independent rect. 5 2
802 28.50 radiation 40.0 10 < th dose dependent rect. 3 23
804 28.51 wind 9.0 270 < th dose independent rect. 8 11
813 28.52 temperature 10.0 30 > th dose independent rect. 11 5
815 28.52 atmosphere 1015.0 30 < th dose independent rect. 11 5
817 28.52 precipitation 0.1 30 < th dose independent rect. 11 5
826 28.52 atmosphere 995.0 30 > th dose dependent rect. 11 5
828 28.52 precipitation 0.1 30 < th dose dependent rect. 11 5
833 28.53 radiation 10.0 30 > th dose independent rect. 11 3
852 28.53 humidity 60.0 30 > th dose independent rect. 12 23
875 28.55 temperature 15.0 720 > th dose independent rect. 23 1
876 28.55 humidity 50.0 30 > th dose independent rect. 11 5
877 28.55 wind 1.0 720 > th dose independent rect. 15 6
878 28.55 wind 9.0 270 < th dose independent rect. 12 11
880 28.55 atmosphere 995.0 30 > th dose dependent rect. 3 8
883 28.55 temperature 10.0 30 > th dose dependent rect. 21 14
888 28.56 precipitation 0.1 720 < th dose independent rect. 10 14
898 28.56 precipitation 0.1 720 < th dose dependent rect. 10 14
900 28.57 wind 9.0 720 < th dose independent rect. 7 5
902 28.57 temperature 30.0 30 < th dose independent rect. 11 8
903 28.57 temperature 30.0 30 < th dose independent rect. 11 10
912 28.58 atmosphere 995.0 720 > th dose independent rect. 17 2
922 28.58 atmosphere 995.0 30 > th dose independent rect. 16 19
927 28.59 temperature 30.0 720 < th dose independent rect. 21 3
928 28.59 humidity 50.0 720 > th dose independent rect. 21 3
931 28.59 atmosphere 995.0 720 > th dose independent rect. 21 3
932 28.59 radiation 1.0 720 < th dose independent rect. 21 3
942 28.59 temperature 10.0 720 > th dose independent rect. 24 21
945 28.59 radiation 1.0 720 < th dose dependent rect. 21 3
963 28.60 precipitation 0.1 720 < th dose independent rect. 21 3
965 28.60 wind 9.0 30 < th dose independent rect. 11 5
970 28.60 atmosphere 995.0 270 > th dose independent rect. 8 11
976 28.60 temperature 10.0 720 > th dose independent rect. 24 12
977 28.60 atmosphere 995.0 720 > th dose independent rect. 24 12
990 28.60 precipitation 0.1 720 < th dose dependent rect. 21 3
992 28.60 atmosphere 1000.0 10 > th dose dependent rect. 24 6