Os08g0162400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os08g0162400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 15.12 | 0.183 | 10 | 0.746 | 0.258 | -0.285 | 0.0906 | 0.462 | 0.253 | 16.7 | 1.862 | 93 | -- | -- |
| 16.07 | 0.187 | 10 | 0.744 | 0.264 | -0.273 | -0.213 | -- | 0.255 | 16.2 | 2.76 | 89 | -- | -- |
| 15.1 | 0.181 | 10 | 0.752 | 0.285 | -0.263 | -- | 0.448 | 0.261 | 16.5 | 2.334 | 71 | -- | -- |
| 16.25 | 0.188 | 10 | 0.753 | 0.284 | -0.254 | -- | -- | 0.261 | 16.3 | 2.702 | 75 | -- | -- |
| 16.2 | 0.187 | 10 | 0.737 | -- | -0.415 | -- | 0.434 | 0.267 | -- | 0.4269 | 253 | -- | -- |
| 16.68 | 0.191 | 10 | 0.777 | 0.504 | -- | -0.426 | -- | 0.281 | 14.2 | -- | -- | -- | -- |
| 17.35 | 0.195 | 10 | 0.765 | 0.505 | -- | -- | -- | 0.279 | 14.3 | -- | -- | -- | -- |
| 17.12 | 0.193 | 10 | 0.727 | -- | -0.416 | -- | -- | 0.266 | -- | 0.65 | 263 | -- | -- |
| 31.24 | 0.26 | 10 | -- | 0.285 | -0.218 | -- | -- | 0.194 | 15.6 | 0.6936 | 105 | -- | -- |
| 32.5 | 0.266 | 10 | 0.744 | -- | -- | -- | -- | 0.267 | -- | -- | -- | -- | -- |
| 32.79 | 0.268 | 10 | -- | 0.49 | -- | -- | -- | 0.194 | 14.3 | -- | -- | -- | -- |
| 30.85 | 0.259 | 10 | -- | -- | -0.431 | -- | -- | 0.181 | -- | 0.001078 | 282 | -- | -- |
| 47.11 | 0.32 | 10 | -- | -- | -- | -- | -- | 0.184 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 14.22 | radiation | 40.0 | 90 | < th | dose independent | rect. | 5 | 22 |
| 2 | 14.25 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 16 | 14 |
| 3 | 14.27 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 2 |
| 4 | 14.29 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 6 | 21 |
| 5 | 14.30 | radiation | 40.0 | 90 | < th | dose independent | rect. | 6 | 20 |
| 7 | 14.34 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 3 | 3 |
| 9 | 14.34 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 14 | 14.38 | wind | 1.0 | 43200 | > th | dose independent | rect. | 4 | 2 |
| 15 | 14.38 | wind | 1.0 | 43200 | < th | dose independent | rect. | 4 | 2 |
| 16 | 14.38 | temperature | 20.0 | 10 | > th | dose independent | rect. | 6 | 21 |
| 17 | 14.38 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 18 | 14.39 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 3 | 3 |
| 20 | 14.40 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 6 | 20 |
| 22 | 14.42 | temperature | 25.0 | 90 | < th | dose independent | rect. | 3 | 2 |
| 30 | 14.43 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 14 | 16 |
| 34 | 14.45 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 36 | 14.47 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 37 | 14.47 | wind | 5.0 | 10 | < th | dose independent | rect. | 3 | 3 |
| 40 | 14.48 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 6 | 21 |
| 42 | 14.49 | wind | 1.0 | 270 | > th | dose independent | rect. | 1 | 2 |
| 44 | 14.49 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 5 | 22 |
| 45 | 14.49 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 2 |
| 46 | 14.49 | wind | 9.0 | 10 | < th | dose dependent | rect. | 3 | 3 |
| 48 | 14.49 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 5 | 22 |
| 50 | 14.50 | radiation | 30.0 | 10 | < th | dose independent | rect. | 6 | 21 |
| 51 | 14.50 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 6 | 21 |
| 54 | 14.50 | radiation | 30.0 | 720 | < th | dose dependent | rect. | 5 | 3 |
| 57 | 14.50 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 6 | 21 |
| 60 | 14.51 | radiation | 10.0 | 10 | < th | dose independent | rect. | 3 | 3 |
| 61 | 14.51 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 63 | 14.51 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 21 | 6 |
| 67 | 14.52 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 3 | 3 |
| 68 | 14.52 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 3 | 3 |
| 69 | 14.52 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 19 | 10 |
| 70 | 14.52 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 18 | 12 |
| 76 | 14.53 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 3 | 3 |
| 77 | 14.53 | radiation | 30.0 | 10 | < th | dose dependent | rect. | 3 | 3 |
| 95 | 14.55 | temperature | 10.0 | 10 | > th | dose independent | rect. | 3 | 3 |
| 97 | 14.55 | temperature | 30.0 | 10 | < th | dose independent | rect. | 3 | 3 |
| 98 | 14.55 | humidity | 50.0 | 10 | > th | dose independent | rect. | 3 | 3 |
| 102 | 14.55 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 3 | 3 |
| 107 | 14.55 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 3 | 3 |
| 108 | 14.55 | radiation | 1.0 | 90 | < th | dose independent | rect. | 2 | 17 |
| 117 | 14.56 | radiation | 40.0 | 270 | < th | dose independent | rect. | 11 | 13 |
| 124 | 14.56 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 18 | 15 |
| 130 | 14.57 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 140 | 14.58 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 1 | 5 |
| 151 | 14.58 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 22 | 22 |
| 166 | 14.59 | temperature | 25.0 | 90 | < th | dose independent | rect. | 15 | 14 |
| 173 | 14.60 | radiation | 40.0 | 270 | < th | dose independent | rect. | 4 | 11 |
| 177 | 14.60 | wind | 9.0 | 10 | < th | dose independent | rect. | 6 | 21 |
| 180 | 14.60 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 3 | 2 |
| 209 | 14.61 | radiation | 20.0 | 720 | < th | dose dependent | rect. | 20 | 12 |
| 211 | 14.62 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 1 | 2 |
| 222 | 14.63 | temperature | 25.0 | 90 | < th | dose independent | rect. | 13 | 16 |
| 224 | 14.63 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 18 | 7 |
| 236 | 14.65 | wind | 5.0 | 270 | < th | dose independent | rect. | 1 | 2 |
| 244 | 14.65 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 18 | 3 |
| 247 | 14.65 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 22 | 8 |
| 254 | 14.66 | radiation | 1.0 | 90 | < th | dose dependent | sin | 2 | NA |
| 258 | 14.66 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 3 | 3 |
| 260 | 14.66 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 24 | 6 |
| 265 | 14.67 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 273 | 14.67 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 3 | 2 |
| 274 | 14.67 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 4 | 2 |
| 281 | 14.67 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 23 | 20 |
| 294 | 14.69 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 18 | 12 |
| 295 | 14.69 | humidity | 50.0 | 270 | > th | dose independent | rect. | 15 | 13 |
| 308 | 14.69 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 16 | 13 |
| 309 | 14.69 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 12 | 18 |
| 318 | 14.70 | radiation | 10.0 | 720 | < th | dose independent | rect. | 20 | 12 |
| 336 | 14.71 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 338 | 14.71 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 20 | 4 |
| 365 | 14.72 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 367 | 14.72 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 368 | 14.72 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 370 | 14.72 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 11 | 2 |
| 391 | 14.72 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 6 | 21 |
| 392 | 14.72 | wind | 9.0 | 720 | < th | dose independent | rect. | 7 | 22 |
| 393 | 14.72 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 401 | 14.73 | wind | 1.0 | 43200 | > th | dose independent | rect. | 2 | 4 |
| 402 | 14.73 | wind | 1.0 | 43200 | < th | dose independent | rect. | 2 | 4 |
| 403 | 14.73 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 20 | 4 |
| 405 | 14.73 | radiation | 10.0 | 720 | < th | dose independent | rect. | 4 | 4 |
| 423 | 14.74 | temperature | 20.0 | 43200 | < th | dose independent | sin | 14 | NA |
| 425 | 14.74 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 428 | 14.74 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 23 | 2 |
| 480 | 14.74 | temperature | 15.0 | 270 | > th | dose independent | rect. | 3 | 22 |
| 481 | 14.74 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 482 | 14.74 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 495 | 14.75 | temperature | 20.0 | 43200 | < th | dose independent | sin | 12 | NA |
| 529 | 14.75 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 18 | 14 |
| 550 | 14.75 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 16 | 14 |
| 554 | 14.76 | temperature | 20.0 | 43200 | > th | dose independent | sin | 13 | NA |
| 631 | 14.76 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 17 | 15 |
| 741 | 14.77 | humidity | 70.0 | 10 | > th | dose independent | rect. | 16 | 14 |
| 764 | 14.77 | wind | 9.0 | 720 | < th | dose independent | rect. | 1 | 18 |
| 819 | 14.77 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 4 | 23 |
| 825 | 14.77 | radiation | 1.0 | 4320 | < th | dose dependent | sin | 9 | NA |
| 846 | 14.78 | temperature | 20.0 | 43200 | > th | dose independent | no | NA | NA |
| 849 | 14.78 | temperature | 20.0 | 43200 | < th | dose independent | no | NA | NA |
| 852 | 14.78 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 853 | 14.78 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 6 | 2 |
| 866 | 14.78 | wind | 1.0 | 14400 | > th | dose independent | rect. | 19 | 7 |
| 908 | 14.78 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 4 | 20 |
| 913 | 14.78 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 6 | 20 |
| 927 | 14.78 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 4 | 21 |
| 948 | 14.78 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 2 | 22 |
| 975 | 14.78 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 23 | 23 |
| 990 | 14.78 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 23 | 23 |
| 993 | 14.78 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 15 | 1 |