Os02g0639800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os02g0639800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 52.57 | 0.341 | 9.3 | 0.597 | 0.986 | -0.784 | -0.165 | -0.645 | 0.209 | 2.7 | 23.4 | 6788 | -- | -- |
| 52.58 | 0.338 | 9.29 | 0.736 | 0.989 | -0.797 | -0.138 | -- | 0.19 | 2.58 | 26.3 | 6883 | -- | -- |
| 52.66 | 0.338 | 9.3 | 0.595 | 0.985 | -0.785 | -- | -0.664 | 0.208 | 2.68 | 23.42 | 6774 | -- | -- |
| 52.58 | 0.338 | 9.29 | 0.771 | 0.985 | -0.834 | -- | -- | 0.205 | 2.65 | 26.2 | 6883 | -- | -- |
| 75.89 | 0.408 | 9.3 | 0.616 | -- | -0.711 | -- | -0.0495 | 0.167 | -- | 26.5 | 9021 | -- | -- |
| 74.84 | 0.406 | 9.34 | 0.403 | 0.927 | -- | -0.279 | -- | -0.0438 | 2.77 | -- | -- | -- | -- |
| 75.11 | 0.406 | 9.34 | 0.41 | 0.926 | -- | -- | -- | -0.042 | 2.75 | -- | -- | -- | -- |
| 75.9 | 0.408 | 9.3 | 0.627 | -- | -0.713 | -- | -- | 0.17 | -- | 26.5 | 9021 | -- | -- |
| 65.7 | 0.378 | 9.31 | -- | 0.935 | -0.579 | -- | -- | 0.0896 | 2.58 | 28.3 | 7887 | -- | -- |
| 124.89 | 0.522 | 9.34 | 0.449 | -- | -- | -- | -- | -0.0185 | -- | -- | -- | -- | -- |
| 79.53 | 0.417 | 9.35 | -- | 0.934 | -- | -- | -- | -0.0877 | 2.76 | -- | -- | -- | -- |
| 86.1 | 0.434 | 9.31 | -- | -- | -0.671 | -- | -- | 0.0904 | -- | 26.5 | 9021 | -- | -- |
| 130.21 | 0.533 | 9.35 | -- | -- | -- | -- | -- | -0.0683 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.04 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 4 | 51.39 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 7 | 51.43 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 17 | 6 |
| 15 | 51.53 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 45 | 52.17 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 19 | 2 |
| 81 | 52.51 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 143 | 52.74 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 163 | 52.78 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 18 | 8 |
| 168 | 52.79 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 18 | 8 |
| 170 | 52.80 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 17 | 11 |
| 209 | 52.85 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 18 | 23 |
| 257 | 52.93 | temperature | 20.0 | 14400 | > th | dose dependent | sin | 13 | NA |
| 258 | 52.93 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 272 | 52.96 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 7 | 1 |
| 298 | 52.98 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 2 |
| 307 | 52.99 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 7 | 1 |
| 318 | 53.01 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 319 | 53.01 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 321 | 53.01 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 342 | 53.04 | temperature | 25.0 | 14400 | < th | dose independent | sin | 15 | NA |
| 354 | 53.06 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 3 | 1 |
| 363 | 53.09 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 393 | 53.12 | temperature | 10.0 | 14400 | > th | dose dependent | sin | 13 | NA |
| 406 | 53.14 | temperature | 30.0 | 14400 | < th | dose dependent | sin | 13 | NA |
| 452 | 53.19 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 461 | 53.20 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 474 | 53.21 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 1 | 4 |
| 481 | 53.22 | temperature | 25.0 | 14400 | > th | dose independent | sin | 15 | NA |
| 506 | 53.24 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 564 | 53.29 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 3 | 1 |
| 656 | 53.37 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 24 | 4 |
| 711 | 53.41 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 16 | 16 |
| 934 | 53.57 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 16 | 16 |