BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0639800 Os02g0639800|AK071904
(286 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0639800 Zinc finger, RING-type domain containing protein 266 9e-72
Os04g0530500 Zinc finger, RING-type domain containing protein 119 2e-27
AK065326 119 2e-27
Os01g0766200 Zinc finger, RING-type domain containing protein 86 4e-17
Os03g0678400 Zinc finger, RING-type domain containing protein 82 5e-16
Os01g0830200 Zinc finger, RING-type domain containing protein 77 1e-14
Os12g0636000 Zinc finger, RING-type domain containing protein 77 1e-14
Os05g0470700 Zinc finger, RING-type domain containing protein 77 1e-14
Os08g0162400 Zinc finger, RING-type domain containing protein 75 7e-14
>Os02g0639800 Zinc finger, RING-type domain containing protein
Length = 286
Score = 266 bits (681), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 150/272 (55%), Positives = 150/272 (55%)
Query: 1 MDQLCTSGGSDSDKSLAAGDEPAVRVRGEVXXXXXXXXXXXXXQGGGCFDCNICLDFATE 60
MDQLCTSGGSDSDKSLAAGDEPAVRVRGEV QGGGCFDCNICLDFATE
Sbjct: 1 MDQLCTSGGSDSDKSLAAGDEPAVRVRGEVEAEAAAAAAAAEAQGGGCFDCNICLDFATE 60
Query: 61 PVVTLCGHLYCWPCIYEWLHPXXXXXXXXXXXXXTRRRPCPVCKAAVSPDTLVPLYXXXX 120
PVVTLCGHLYCWPCIYEWLHP TRRRPCPVCKAAVSPDTLVPLY
Sbjct: 61 PVVTLCGHLYCWPCIYEWLHPGGDDDGSNGDASSTRRRPCPVCKAAVSPDTLVPLYGRGR 120
Query: 121 XXXXXXXXXXXXIPRRPIVHREPVERQXXXXXXXXXXXXXXXXXXXPPVRSPWXXXXXXX 180
IPRRPIVHREPVERQ PPVRSPW
Sbjct: 121 GGSSKRARSGSAIPRRPIVHREPVERQSDRLGDDDGGHRHGSTGSSPPVRSPWHANHHAA 180
Query: 181 XXXXXXXXXXRLFDXXXXXXXXXXXXXXMFHSXXXXXXXXXXXXXXXVLPWVSRGQXXXX 240
RLFD MFHS VLPWVSRGQ
Sbjct: 181 AASTPAPAPARLFDVVYPPPPAAVGGVGMFHSTTTTTGGMLGGMALAVLPWVSRGQSPAT 240
Query: 241 XXXXXXXXXXXHMSPRLRRQHMEVERSLHQIW 272
HMSPRLRRQHMEVERSLHQIW
Sbjct: 241 AAASAYYTSPYHMSPRLRRQHMEVERSLHQIW 272
>Os04g0530500 Zinc finger, RING-type domain containing protein
Length = 253
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/147 (46%), Positives = 79/147 (53%), Gaps = 16/147 (10%)
Query: 1 MDQLCTSGGSDSDKSLAAGDEPAVRVRGEVXXXXXXXXXXXXXQGGGCFDCNICLDFATE 60
MDQ+ + + ++K+ DEP ++ G++ G CFDCNICLDFA E
Sbjct: 1 MDQIYMA--AVNNKTSLPDDEPMKKISGDMPVTA----------GNACFDCNICLDFAAE 48
Query: 61 PVVTLCGHLYCWPCIYEWLHPXXXXXXXXXXXXXTRRRPCPVCKAAVSPDTLVPLYXXXX 120
PVVTLCGHLYCWPCIYEWL P RR CPVCKA +SPD LVPLY
Sbjct: 49 PVVTLCGHLYCWPCIYEWLCPGVGSTASNNSSLA--RRQCPVCKATLSPDMLVPLY--GR 104
Query: 121 XXXXXXXXXXXXIPRRPIVHREPVERQ 147
IPRRP V RE VE Q
Sbjct: 105 GGSLKKSLNGVPIPRRPTVQREAVEHQ 131
>AK065326
Length = 253
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/147 (46%), Positives = 79/147 (53%), Gaps = 16/147 (10%)
Query: 1 MDQLCTSGGSDSDKSLAAGDEPAVRVRGEVXXXXXXXXXXXXXQGGGCFDCNICLDFATE 60
MDQ+ + + ++K+ DEP ++ G++ G CFDCNICLDFA E
Sbjct: 1 MDQIYMA--AVNNKTSLPDDEPMKKISGDMPVTA----------GNACFDCNICLDFAAE 48
Query: 61 PVVTLCGHLYCWPCIYEWLHPXXXXXXXXXXXXXTRRRPCPVCKAAVSPDTLVPLYXXXX 120
PVVTLCGHLYCWPCIYEWL P RR CPVCKA +SPD LVPLY
Sbjct: 49 PVVTLCGHLYCWPCIYEWLCPGVGSTASNNSSLA--RRQCPVCKATLSPDMLVPLY--GR 104
Query: 121 XXXXXXXXXXXXIPRRPIVHREPVERQ 147
IPRRP V RE VE Q
Sbjct: 105 GGSLKKSLNGVPIPRRPTVQREAVEHQ 131
>Os01g0766200 Zinc finger, RING-type domain containing protein
Length = 224
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 51/103 (49%), Gaps = 14/103 (13%)
Query: 47 GCFDCNICLDFATEPVVTLCGHLYCWPCIYEWLHPXXXXXXXXXXXXXTRRRPCPVCKAA 106
G F+CNICL+ A +PVVTLCGHL+CWPC+YEWLH R CPVCKA
Sbjct: 23 GSFECNICLELAQDPVVTLCGHLFCWPCLYEWLH------------VHAHSRECPVCKAG 70
Query: 107 VSPDTLVPLYXXXXXXXX--XXXXXXXXIPRRPIVHREPVERQ 147
+ + LVPLY IP RP R Q
Sbjct: 71 LEEEKLVPLYGRGKASTDPRSRSVAGVQIPSRPAGQRPATASQ 113
>Os03g0678400 Zinc finger, RING-type domain containing protein
Length = 233
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 38/71 (53%), Positives = 42/71 (59%), Gaps = 12/71 (16%)
Query: 46 GGCFDCNICLDFATEPVVTLCGHLYCWPCIYEWLHPXXXXXXXXXXXXXTRRRPCPVCKA 105
GG F+CNIC + EP+VTLCGHL+CWPCIY WLH CPVCKA
Sbjct: 19 GGSFECNICFELPQEPIVTLCGHLFCWPCIYRWLH------------IHAHSPECPVCKA 66
Query: 106 AVSPDTLVPLY 116
V D LVPLY
Sbjct: 67 VVEEDKLVPLY 77
>Os01g0830200 Zinc finger, RING-type domain containing protein
Length = 561
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 43/73 (58%), Gaps = 12/73 (16%)
Query: 44 QGGGCFDCNICLDFATEPVVTLCGHLYCWPCIYEWLHPXXXXXXXXXXXXXTRRRPCPVC 103
+ F+CNIC D A+EPVVT CGHL+CWPC+Y+WL+ + + CPVC
Sbjct: 228 RSAATFECNICFDMASEPVVTSCGHLFCWPCLYQWLN------------VYSNHKECPVC 275
Query: 104 KAAVSPDTLVPLY 116
K V+ + P+Y
Sbjct: 276 KGEVTEANITPIY 288
>Os12g0636000 Zinc finger, RING-type domain containing protein
Length = 234
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 42/68 (61%), Gaps = 12/68 (17%)
Query: 49 FDCNICLDFATEPVVTLCGHLYCWPCIYEWLHPXXXXXXXXXXXXXTRRRPCPVCKAAVS 108
F+CNIC + EP+VTLCGHL+CWPC+Y+WLH + CPVCKA V
Sbjct: 23 FECNICFELPQEPIVTLCGHLFCWPCLYKWLH------------IHSHSPECPVCKAVVE 70
Query: 109 PDTLVPLY 116
D LVPLY
Sbjct: 71 EDKLVPLY 78
>Os05g0470700 Zinc finger, RING-type domain containing protein
Length = 562
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 42/70 (60%), Gaps = 12/70 (17%)
Query: 47 GCFDCNICLDFATEPVVTLCGHLYCWPCIYEWLHPXXXXXXXXXXXXXTRRRPCPVCKAA 106
F+CNIC + A+EPVVT CGHL+CWPC+Y+WLH + + CPVCK
Sbjct: 234 AMFECNICFEMASEPVVTSCGHLFCWPCLYQWLH------------VHSTHKECPVCKGE 281
Query: 107 VSPDTLVPLY 116
V+ + P+Y
Sbjct: 282 VTEGNITPIY 291
>Os08g0162400 Zinc finger, RING-type domain containing protein
Length = 455
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 47/101 (46%), Gaps = 13/101 (12%)
Query: 47 GCFDCNICLDFATEPVVTLCGHLYCWPCIYEWLHPXXXXXXXXXXXXXTRRRPCPVCKAA 106
G F+CNIC + A +PVVT CGHL+CWPCIY+WLH + CPVCK
Sbjct: 237 GSFECNICFESAKDPVVTPCGHLFCWPCIYQWLH------------GHSEHSDCPVCKGE 284
Query: 107 VSPDTLVPLYXXXXXXXXXXXXXXXXIPRRPIVHREPVERQ 147
V + P+Y IP RP R RQ
Sbjct: 285 VLEVNVTPIY-GRGGGEENSSRNDIQIPPRPSAQRTESLRQ 324
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.326 0.141 0.499
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,031,370
Number of extensions: 171494
Number of successful extensions: 653
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 639
Number of HSP's successfully gapped: 9
Length of query: 286
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 186
Effective length of database: 11,814,401
Effective search space: 2197478586
Effective search space used: 2197478586
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 155 (64.3 bits)