Os04g0530500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os04g0530500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48.02 | 0.326 | 11.3 | -0.912 | 0.166 | 0.908 | 0.254 | -2.39 | -0.406 | 13.1 | 22.22 | 1310 | -- | -- |
| 51.51 | 0.334 | 11.2 | -0.236 | 0.124 | 0.784 | 0.308 | -- | -0.225 | 13.3 | 19.79 | 1407 | -- | -- |
| 48.22 | 0.323 | 11.3 | -0.937 | 0.173 | 0.919 | -- | -2.53 | -0.413 | 12.5 | 22.26 | 1292 | -- | -- |
| 52 | 0.336 | 11.2 | -0.231 | 0.135 | 0.758 | -- | -- | -0.228 | 12.6 | 20.06 | 1386 | -- | -- |
| 49.65 | 0.328 | 11.3 | -0.876 | -- | 0.846 | -- | -2.22 | -0.395 | -- | 22.09 | 1407 | -- | -- |
| 69.23 | 0.39 | 11.1 | 0.0428 | 0.0376 | -- | 0.458 | -- | -0.0498 | 15.2 | -- | -- | -- | -- |
| 69.61 | 0.391 | 11.1 | 0.0519 | 0.0792 | -- | -- | -- | -0.0476 | 10.9 | -- | -- | -- | -- |
| 52.73 | 0.338 | 11.2 | -0.229 | -- | 0.747 | -- | -- | -0.226 | -- | 20.12 | 1550 | -- | -- |
| 53.15 | 0.34 | 11.2 | -- | 0.135 | 0.675 | -- | -- | -0.182 | 12.5 | 20.6 | 1392 | -- | -- |
| 70 | 0.391 | 11.1 | 0.0502 | -- | -- | -- | -- | -0.0482 | -- | -- | -- | -- | -- |
| 69.68 | 0.39 | 11.1 | -- | 0.0788 | -- | -- | -- | -0.0534 | 10.8 | -- | -- | -- | -- |
| 53.92 | 0.342 | 11.2 | -- | -- | 0.667 | -- | -- | -0.186 | -- | 20.7 | 1547 | -- | -- |
| 70.06 | 0.391 | 11.1 | -- | -- | -- | -- | -- | -0.0537 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.36 | temperature | 25 | 1440 | > th | dose independent | rect. | 18 | 3 |
| 5 | 46.71 | temperature | 25 | 1440 | < th | dose independent | rect. | 18 | 3 |
| 10 | 46.79 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 18 | 46.97 | temperature | 20 | 720 | > th | dose dependent | sin | 11 | NA |
| 35 | 47.37 | temperature | 25 | 1440 | > th | dose independent | sin | 16 | NA |
| 40 | 47.47 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 51 | 47.63 | temperature | 25 | 1440 | < th | dose independent | sin | 16 | NA |
| 54 | 47.65 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 15 |
| 92 | 47.91 | temperature | 25 | 1440 | > th | dose independent | rect. | 9 | 19 |
| 95 | 47.92 | temperature | 20 | 1440 | > th | dose dependent | sin | 14 | NA |
| 104 | 47.97 | temperature | 25 | 1440 | > th | dose independent | rect. | 9 | 22 |
| 189 | 48.35 | temperature | 25 | 1440 | < th | dose independent | rect. | 9 | 17 |
| 197 | 48.37 | temperature | 25 | 1440 | < th | dose independent | rect. | 9 | 22 |
| 199 | 48.39 | temperature | 25 | 1440 | < th | dose independent | rect. | 9 | 20 |
| 247 | 48.52 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 7 |
| 307 | 48.69 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 7 |
| 327 | 48.74 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 20 |
| 330 | 48.75 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 4 |
| 378 | 48.89 | temperature | 25 | 1440 | < th | dose independent | rect. | 14 | 17 |
| 429 | 48.98 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 5 |
| 448 | 49.03 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 560 | 49.29 | temperature | 25 | 1440 | > th | dose independent | rect. | 16 | 22 |
| 567 | 49.31 | temperature | 25 | 1440 | > th | dose independent | rect. | 1 | 22 |
| 577 | 49.34 | temperature | 25 | 1440 | > th | dose independent | rect. | 6 | 23 |
| 588 | 49.36 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 22 |
| 614 | 49.40 | temperature | 25 | 1440 | < th | dose independent | rect. | 3 | 21 |
| 626 | 49.41 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 647 | 49.43 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 659 | 49.45 | temperature | 20 | 1440 | > th | dose dependent | rect. | 22 | 23 |
| 681 | 49.48 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 682 | 49.49 | temperature | 25 | 1440 | > th | dose independent | no | NA | NA |
| 687 | 49.49 | temperature | 25 | 1440 | < th | dose independent | rect. | 6 | 23 |
| 695 | 49.50 | temperature | 25 | 1440 | < th | dose independent | rect. | 6 | 20 |
| 820 | 49.63 | temperature | 25 | 1440 | < th | dose independent | no | NA | NA |
| 1000 | 49.77 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 23 |