BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0530500 Os04g0530500|AK070732
(253 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0530500 Zinc finger, RING-type domain containing protein 471 e-133
AK065326 471 e-133
Os02g0639800 Zinc finger, RING-type domain containing protein 183 1e-46
Os01g0766200 Zinc finger, RING-type domain containing protein 103 1e-22
Os12g0636000 Zinc finger, RING-type domain containing protein 94 7e-20
Os03g0678400 Zinc finger, RING-type domain containing protein 93 2e-19
Os08g0162400 Zinc finger, RING-type domain containing protein 90 2e-18
Os01g0830200 Zinc finger, RING-type domain containing protein 88 6e-18
Os05g0470700 Zinc finger, RING-type domain containing protein 86 2e-17
>Os04g0530500 Zinc finger, RING-type domain containing protein
Length = 253
Score = 471 bits (1213), Expect = e-133, Method: Compositional matrix adjust.
Identities = 226/239 (94%), Positives = 226/239 (94%)
Query: 1 MDQIYMAAVNNKTSLPDDEPMKKISGDMPVTAGNACFDCNICLDFAAEPVVTLCGHLYCW 60
MDQIYMAAVNNKTSLPDDEPMKKISGDMPVTAGNACFDCNICLDFAAEPVVTLCGHLYCW
Sbjct: 1 MDQIYMAAVNNKTSLPDDEPMKKISGDMPVTAGNACFDCNICLDFAAEPVVTLCGHLYCW 60
Query: 61 PCIYEWLCPGVGSTASNNSSLARRQCPVCKATLSPDMLVPLYGRGGSLKKSLNGVPIPRR 120
PCIYEWLCPGVGSTASNNSSLARRQCPVCKATLSPDMLVPLYGRGGSLKKSLNGVPIPRR
Sbjct: 61 PCIYEWLCPGVGSTASNNSSLARRQCPVCKATLSPDMLVPLYGRGGSLKKSLNGVPIPRR 120
Query: 121 PTVQREAVEHQNTHNNIDDRHHENMEPSPPPQPLRHSSHHSSATEFDFIYPPSPIGRGLI 180
PTVQREAVEHQNTHNNIDDRHHENMEPSPPPQPLRHSSHHSSATEFDFIYPPSPIGRGLI
Sbjct: 121 PTVQREAVEHQNTHNNIDDRHHENMEPSPPPQPLRHSSHHSSATEFDFIYPPSPIGRGLI 180
Query: 181 HSTXXXXXXXXXXXXXPWAFRGQVPPSMFMSPHYVTAHNMSSRARRHQMEVERSLHQIW 239
HST PWAFRGQVPPSMFMSPHYVTAHNMSSRARRHQMEVERSLHQIW
Sbjct: 181 HSTAGGVLGGMAVAVLPWAFRGQVPPSMFMSPHYVTAHNMSSRARRHQMEVERSLHQIW 239
>AK065326
Length = 253
Score = 471 bits (1213), Expect = e-133, Method: Compositional matrix adjust.
Identities = 226/239 (94%), Positives = 226/239 (94%)
Query: 1 MDQIYMAAVNNKTSLPDDEPMKKISGDMPVTAGNACFDCNICLDFAAEPVVTLCGHLYCW 60
MDQIYMAAVNNKTSLPDDEPMKKISGDMPVTAGNACFDCNICLDFAAEPVVTLCGHLYCW
Sbjct: 1 MDQIYMAAVNNKTSLPDDEPMKKISGDMPVTAGNACFDCNICLDFAAEPVVTLCGHLYCW 60
Query: 61 PCIYEWLCPGVGSTASNNSSLARRQCPVCKATLSPDMLVPLYGRGGSLKKSLNGVPIPRR 120
PCIYEWLCPGVGSTASNNSSLARRQCPVCKATLSPDMLVPLYGRGGSLKKSLNGVPIPRR
Sbjct: 61 PCIYEWLCPGVGSTASNNSSLARRQCPVCKATLSPDMLVPLYGRGGSLKKSLNGVPIPRR 120
Query: 121 PTVQREAVEHQNTHNNIDDRHHENMEPSPPPQPLRHSSHHSSATEFDFIYPPSPIGRGLI 180
PTVQREAVEHQNTHNNIDDRHHENMEPSPPPQPLRHSSHHSSATEFDFIYPPSPIGRGLI
Sbjct: 121 PTVQREAVEHQNTHNNIDDRHHENMEPSPPPQPLRHSSHHSSATEFDFIYPPSPIGRGLI 180
Query: 181 HSTXXXXXXXXXXXXXPWAFRGQVPPSMFMSPHYVTAHNMSSRARRHQMEVERSLHQIW 239
HST PWAFRGQVPPSMFMSPHYVTAHNMSSRARRHQMEVERSLHQIW
Sbjct: 181 HSTAGGVLGGMAVAVLPWAFRGQVPPSMFMSPHYVTAHNMSSRARRHQMEVERSLHQIW 239
>Os02g0639800 Zinc finger, RING-type domain containing protein
Length = 286
Score = 183 bits (464), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 123/273 (45%), Positives = 148/273 (54%), Gaps = 35/273 (12%)
Query: 1 MDQIYMAAVNN--KTSLPDDEPMKKISGDMPVTA----------GNACFDCNICLDFAAE 48
MDQ+ + ++ K+ DEP ++ G++ A G CFDCNICLDFA E
Sbjct: 1 MDQLCTSGGSDSDKSLAAGDEPAVRVRGEVEAEAAAAAAAAEAQGGGCFDCNICLDFATE 60
Query: 49 PVVTLCGHLYCWPCIYEWLCPGVGSTASNN--SSLARRQCPVCKATLSPDMLVPLY--GR 104
PVVTLCGHLYCWPCIYEWL PG SN SS RR CPVCKA +SPD LVPLY GR
Sbjct: 61 PVVTLCGHLYCWPCIYEWLHPGGDDDGSNGDASSTRRRPCPVCKAAVSPDTLVPLYGRGR 120
Query: 105 GGSLKKSLNGVPIPRRPTVQREAVEHQNTHNNIDDRHHENMEPSPPPQPLRH-------- 156
GGS K++ +G IPRRP V RE VE Q+ DD H + P P+R
Sbjct: 121 GGSSKRARSGSAIPRRPIVHREPVERQSDRLGDDDGGHRHGSTGSSP-PVRSPWHANHHA 179
Query: 157 ----SSHHSSATEFDFIYPPSPI---GRGLIHS---TXXXXXXXXXXXXXPWAFRGQVPP 206
+ + A FD +YPP P G G+ HS T PW RGQ P
Sbjct: 180 AAASTPAPAPARLFDVVYPPPPAAVGGVGMFHSTTTTTGGMLGGMALAVLPWVSRGQSPA 239
Query: 207 SMFMSPHYVTAHNMSSRARRHQMEVERSLHQIW 239
+ S +Y + ++MS R RR MEVERSLHQIW
Sbjct: 240 TAAASAYYTSPYHMSPRLRRQHMEVERSLHQIW 272
>Os01g0766200 Zinc finger, RING-type domain containing protein
Length = 224
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 63/102 (61%), Gaps = 14/102 (13%)
Query: 34 NACFDCNICLDFAAEPVVTLCGHLYCWPCIYEWLCPGVGSTASNNSSLARRQCPVCKATL 93
+ F+CNICL+ A +PVVTLCGHL+CWPC+YEWL + R+CPVCKA L
Sbjct: 22 SGSFECNICLELAQDPVVTLCGHLFCWPCLYEWL----------HVHAHSRECPVCKAGL 71
Query: 94 SPDMLVPLYGRGGS----LKKSLNGVPIPRRPTVQREAVEHQ 131
+ LVPLYGRG + +S+ GV IP RP QR A Q
Sbjct: 72 EEEKLVPLYGRGKASTDPRSRSVAGVQIPSRPAGQRPATASQ 113
>Os12g0636000 Zinc finger, RING-type domain containing protein
Length = 234
Score = 94.4 bits (233), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 63/117 (53%), Gaps = 18/117 (15%)
Query: 37 FDCNICLDFAAEPVVTLCGHLYCWPCIYEWLCPGVGSTASNNSSLARRQCPVCKATLSPD 96
F+CNIC + EP+VTLCGHL+CWPC+Y+WL + +CPVCKA + D
Sbjct: 23 FECNICFELPQEPIVTLCGHLFCWPCLYKWL----------HIHSHSPECPVCKAVVEED 72
Query: 97 MLVPLYGRGGS----LKKSLNGVPIPRRPTVQREAVEHQNTHNNIDDRHHENMEPSP 149
LVPLYGRG K++ G IP RP QR A Q N H N P+P
Sbjct: 73 KLVPLYGRGKDRVDPRSKNVPGADIPNRPAGQRPATAPQANPNT----HFPNANPNP 125
>Os03g0678400 Zinc finger, RING-type domain containing protein
Length = 233
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/104 (46%), Positives = 57/104 (54%), Gaps = 14/104 (13%)
Query: 32 AGNACFDCNICLDFAAEPVVTLCGHLYCWPCIYEWLCPGVGSTASNNSSLARRQCPVCKA 91
A F+CNIC + EP+VTLCGHL+CWPCIY WL + +CPVCKA
Sbjct: 17 AAGGSFECNICFELPQEPIVTLCGHLFCWPCIYRWL----------HIHAHSPECPVCKA 66
Query: 92 TLSPDMLVPLYGRGGS----LKKSLNGVPIPRRPTVQREAVEHQ 131
+ D LVPLYGRG K++ IP RPT QR A Q
Sbjct: 67 VVEEDKLVPLYGRGKDRVDPRSKNIPEADIPNRPTGQRPATAPQ 110
>Os08g0162400 Zinc finger, RING-type domain containing protein
Length = 455
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 58/100 (58%), Gaps = 12/100 (12%)
Query: 34 NACFDCNICLDFAAEPVVTLCGHLYCWPCIYEWLCPGVGSTASNNSSLARRQCPVCKATL 93
N F+CNIC + A +PVVT CGHL+CWPCIY+WL + CPVCK +
Sbjct: 236 NGSFECNICFESAKDPVVTPCGHLFCWPCIYQWL----------HGHSEHSDCPVCKGEV 285
Query: 94 SPDMLVPLYGRGGSLKK-SLNGVPIPRRPTVQR-EAVEHQ 131
+ P+YGRGG + S N + IP RP+ QR E++ Q
Sbjct: 286 LEVNVTPIYGRGGGEENSSRNDIQIPPRPSAQRTESLRQQ 325
>Os01g0830200 Zinc finger, RING-type domain containing protein
Length = 561
Score = 88.2 bits (217), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 62/108 (57%), Gaps = 18/108 (16%)
Query: 35 ACFDCNICLDFAAEPVVTLCGHLYCWPCIYEWLCPGVGSTASNNSSLARRQCPVCKATLS 94
A F+CNIC D A+EPVVT CGHL+CWPC+Y+WL + SN+ ++CPVCK ++
Sbjct: 231 ATFECNICFDMASEPVVTSCGHLFCWPCLYQWL-----NVYSNH-----KECPVCKGEVT 280
Query: 95 PDMLVPLYGRGGS---LKKSLNGVP-----IPRRPTVQREAVEHQNTH 134
+ P+YGRG S +K++ G IP RP R Q H
Sbjct: 281 EANITPIYGRGNSCLDAEKAVEGGKQTGPTIPPRPHGNRLESFRQQFH 328
>Os05g0470700 Zinc finger, RING-type domain containing protein
Length = 562
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 60/109 (55%), Gaps = 19/109 (17%)
Query: 35 ACFDCNICLDFAAEPVVTLCGHLYCWPCIYEWLCPGVGSTASNNSSLARRQCPVCKATLS 94
A F+CNIC + A+EPVVT CGHL+CWPC+Y+WL V ST ++CPVCK ++
Sbjct: 234 AMFECNICFEMASEPVVTSCGHLFCWPCLYQWL--HVHST--------HKECPVCKGEVT 283
Query: 95 PDMLVPLYGRGGSLKKS---------LNGVPIPRRPTVQREAVEHQNTH 134
+ P+YGRG S + ++G IP RP R Q H
Sbjct: 284 EGNITPIYGRGNSTSDAEKKVAEEGNVSGPTIPPRPHGNRLESFRQKFH 332
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.134 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,307,230
Number of extensions: 427408
Number of successful extensions: 2314
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 2301
Number of HSP's successfully gapped: 9
Length of query: 253
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 154
Effective length of database: 11,866,615
Effective search space: 1827458710
Effective search space used: 1827458710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)