BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0530500 Os04g0530500|AK070732
(253 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G27470.1 | chr4:13735576-13736307 FORWARD LENGTH=244 105 3e-23
AT4G03510.1 | chr4:1557905-1558654 REVERSE LENGTH=250 100 6e-22
AT1G19310.1 | chr1:6676424-6677104 REVERSE LENGTH=227 100 8e-22
AT2G23780.1 | chr2:10123551-10124234 REVERSE LENGTH=228 93 2e-19
AT3G58030.1 | chr3:21485527-21486837 FORWARD LENGTH=437 92 3e-19
AT1G74990.1 | chr1:28159837-28160250 REVERSE LENGTH=138 92 3e-19
AT4G28270.1 | chr4:14007614-14008195 REVERSE LENGTH=194 92 4e-19
AT2G42030.1 | chr2:17539069-17540346 REVERSE LENGTH=426 91 7e-19
AT2G44410.1 | chr2:18328873-18330114 FORWARD LENGTH=414 71 7e-13
AT3G26730.1 | chr3:9823770-9827270 FORWARD LENGTH=773 56 2e-08
AT2G26350.1 | chr2:11217767-11220415 REVERSE LENGTH=382 49 3e-06
>AT4G27470.1 | chr4:13735576-13736307 FORWARD LENGTH=244
Length = 243
Score = 105 bits (261), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 90/173 (52%), Gaps = 26/173 (15%)
Query: 31 TAGNA----CFDCNICLDFAAEPVVTLCGHLYCWPCIYEWLCPGVGSTASNNSSLARRQC 86
TAG A CFDCNICLD A +PVVTLCGHL+CWPCIY+WL + S + + + C
Sbjct: 32 TAGQANESGCFDCNICLDTAHDPVVTLCGHLFCWPCIYKWLHVQLSSVSVDQH---QNNC 88
Query: 87 PVCKATLSPDMLVPLYGRG--------GSLKKSLNGVPIPRR--PTVQREAVEHQNTHNN 136
PVCK+ ++ LVPLYGRG GS K+ IPRR P+ R + ++ N
Sbjct: 89 PVCKSNITITSLVPLYGRGMSSPSSTFGSKKQDALSTDIPRRPAPSALRNPITSASSLN- 147
Query: 137 IDDRHHENMEP-------SPPPQPLRHSSHHSSATEFDFIYPPSPIGRGLIHS 182
H+ + P SP S+ ++A F+YP + L+++
Sbjct: 148 -PSLQHQTLSPSFHNHQYSPRGFTTTESTDLANAVMMSFLYPVIGMFGDLVYT 199
>AT4G03510.1 | chr4:1557905-1558654 REVERSE LENGTH=250
Length = 249
Score = 100 bits (250), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 100/206 (48%), Gaps = 19/206 (9%)
Query: 37 FDCNICLDFAAEPVVTLCGHLYCWPCIYEWLCPGVGSTASNNSSLARRQCPVCKATLSPD 96
FDCNICLD EPVVTLCGHL+CWPCI++WL V S ++++ RQCPVCK+ +S
Sbjct: 46 FDCNICLDSVQEPVVTLCGHLFCWPCIHKWL--DVQSFSTSDEYQRHRQCPVCKSKVSHS 103
Query: 97 MLVPLYGRGGSLKKSLNGVPIPRRPTVQREAVEHQNT-HNNIDDRHHENMEPSPPPQPLR 155
LVPLYGRG + +P+RP +E N+ + + D R + + + P +
Sbjct: 104 TLVPLYGRGRCTTQEEGKNSVPKRPVGPVYRLEMPNSPYASTDLRLSQRVHFNSPQEGYY 163
Query: 156 HSS--HHSSATEFDFIYPPSPIGRGLIHSTXXXXXXXXXXXXXPWAFRGQVPPSMFMSPH 213
S S++ + + P + G + +T F +V
Sbjct: 164 PVSGVMSSNSLSYSAVLDPVMVMVGEMVATR--------------LFGTRVMDRFAYPDT 209
Query: 214 YVTAHNMSSRARRHQMEVERSLHQIW 239
Y A R RR M+ ++SL +I+
Sbjct: 210 YNLAGTSGPRMRRRIMQADKSLGRIF 235
>AT1G19310.1 | chr1:6676424-6677104 REVERSE LENGTH=227
Length = 226
Score = 100 bits (249), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 47/93 (50%), Positives = 60/93 (64%), Gaps = 14/93 (15%)
Query: 37 FDCNICLDFAAEPVVTLCGHLYCWPCIYEWLCPGVGSTASNNSSLARRQCPVCKATLSPD 96
F+CNICLD A +P+VTLCGHL+CWPC+Y+WL + + CPVCKA + D
Sbjct: 21 FECNICLDLAQDPIVTLCGHLFCWPCLYKWL----------HLHSQSKDCPVCKAVIEED 70
Query: 97 MLVPLYGRGGS----LKKSLNGVPIPRRPTVQR 125
LVPLYGRG S KS+ G+ +P RP+ QR
Sbjct: 71 RLVPLYGRGKSSADPRSKSIPGLEVPNRPSGQR 103
>AT2G23780.1 | chr2:10123551-10124234 REVERSE LENGTH=228
Length = 227
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 45/93 (48%), Positives = 57/93 (61%), Gaps = 14/93 (15%)
Query: 37 FDCNICLDFAAEPVVTLCGHLYCWPCIYEWLCPGVGSTASNNSSLARRQCPVCKATLSPD 96
F+CNIC + A +P+VTLCGHL+CWPC+Y WL + ++CPVCKA + D
Sbjct: 26 FECNICFELAQDPIVTLCGHLFCWPCLYRWL----------HHHSHSQECPVCKAVVQDD 75
Query: 97 MLVPLYGRGGSL----KKSLNGVPIPRRPTVQR 125
LVPLYGRG + K G+ IP RPT QR
Sbjct: 76 KLVPLYGRGKNQTDPRSKRYPGLRIPNRPTGQR 108
>AT3G58030.1 | chr3:21485527-21486837 FORWARD LENGTH=437
Length = 436
Score = 92.0 bits (227), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 64/119 (53%), Gaps = 15/119 (12%)
Query: 10 NNKTSLPDDEPMKKISGDMPVTAGNACFDCNICLDFAAEPVVTLCGHLYCWPCIYEWLCP 69
N +L D KK + + FDCNICLD + EPV+T CGHLYCWPC+Y+WL
Sbjct: 110 NGDGALGDGVLDKKADVEKSSGSDGNFFDCNICLDLSKEPVLTCCGHLYCWPCLYQWLQI 169
Query: 70 GVGSTASNNSSLARRQCPVCKATLSPDMLVPLYGRGG---SLKKSLNGVPIPRRPTVQR 125
++CPVCK ++ + P+YGRG +++SL+ +P RP +R
Sbjct: 170 SDA-----------KECPVCKGEVTSKTVTPIYGRGNHKREIEESLD-TKVPMRPHARR 216
>AT1G74990.1 | chr1:28159837-28160250 REVERSE LENGTH=138
Length = 137
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/110 (43%), Positives = 60/110 (54%), Gaps = 18/110 (16%)
Query: 37 FDCNICLDFAAEPVVTLCGHLYCWPCIYEWLCPGVGSTASNNSSLARRQCPVCKATLSPD 96
F CNICL+ A EP+VTLCGHL+CWPC+Y+WL + CPVCKA + D
Sbjct: 17 FGCNICLELAREPIVTLCGHLFCWPCLYKWL----------HYHSKSNHCPVCKALVKED 66
Query: 97 MLVPLYGRG---GSLKKSLN-GVPIPRRPTVQREAVEHQNTHNNIDDRHH 142
LVPLYG G + LN GV +P RP R + ++ RHH
Sbjct: 67 TLVPLYGMGKPSSDPRSKLNSGVTVPNRPAATRT----ETARPRLEQRHH 112
>AT4G28270.1 | chr4:14007614-14008195 REVERSE LENGTH=194
Length = 193
Score = 91.7 bits (226), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/111 (45%), Positives = 63/111 (56%), Gaps = 17/111 (15%)
Query: 21 MKKISGDMPVTAGNACFDCNICLDFAAEPVVTLCGHLYCWPCIYEWLCPGVGSTASNNSS 80
++K D + FDCNICLD +PVVTLCGHL+CWPCI++W + ASNNS
Sbjct: 3 IEKDEDDTTLVDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKW------TYASNNSR 56
Query: 81 LARRQ---------CPVCKATLSPDMLVPLYGRGGSLKKSLNGVPIPRRPT 122
Q CPVCK+ +S LVP+YGRG +S G +P RPT
Sbjct: 57 QRVDQYDHKREPPKCPVCKSDVSEATLVPIYGRGQKAPQS--GSNVPSRPT 105
>AT2G42030.1 | chr2:17539069-17540346 REVERSE LENGTH=426
Length = 425
Score = 90.9 bits (224), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 63/117 (53%), Gaps = 13/117 (11%)
Query: 11 NKTSLPDDEPMKKISGDMPVTAGNACFDCNICLDFAAEPVVTLCGHLYCWPCIYEWLCPG 70
+K D+ +K + V + + FDC ICLD + +PVVT CGHLYCW C+Y+WL
Sbjct: 113 SKVMAEDNVTEEKRDVEKSVGSDGSFFDCYICLDLSKDPVVTNCGHLYCWSCLYQWLQVS 172
Query: 71 VGSTASNNSSLARRQCPVCKATLSPDMLVPLYGRGGSLKKS--LNGVPIPRRPTVQR 125
++CPVCK +S + P+YGRG ++S ++ IP RP +R
Sbjct: 173 EA-----------KECPVCKGEVSVKTVTPIYGRGIQKRESEEVSNTKIPSRPQARR 218
>AT2G44410.1 | chr2:18328873-18330114 FORWARD LENGTH=414
Length = 413
Score = 70.9 bits (172), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 54/104 (51%), Gaps = 15/104 (14%)
Query: 37 FDCNICLDFAAEPVVTLCGHLYCWPCIYEWLCPGVGSTASNNSSLARRQCPVCKATLSPD 96
FDCNICL+ A +P++T CGHL+CW C Y+ P + L ++CPVC ++
Sbjct: 123 FDCNICLEKAEDPILTCCGHLFCWGCFYQL--PLI--------YLNIKECPVCDGEVTDA 172
Query: 97 MLVPLYGRG---GSLKKSLN--GVPIPRRPTVQREAVEHQNTHN 135
++P+YG G K L G+ +P RP +R Q N
Sbjct: 173 EVIPIYGNGDDCDGTKPKLEDCGISLPPRPNAKRVESVRQKIIN 216
>AT3G26730.1 | chr3:9823770-9827270 FORWARD LENGTH=773
Length = 772
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 4/64 (6%)
Query: 39 CNICLDFAAEPVVTLCGHLYCWPCIYEWLCPGVGSTASNNSSLARRQCPVCKATLSPDML 98
C ICL++ P +T CGH++C+PCI ++L GV N+ ++CP+C +SP L
Sbjct: 245 CPICLEYPLCPQITSCGHIFCFPCILQYLLTGV----DNHKVDCFKRCPLCFVMISPREL 300
Query: 99 VPLY 102
+Y
Sbjct: 301 YTVY 304
>AT2G26350.1 | chr2:11217767-11220415 REVERSE LENGTH=382
Length = 381
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 13/95 (13%)
Query: 8 AVNNKTSLPDDEPMKKISGDMPVTAGNACFDCNICLDFAAEPVVTLCGHLYCWPCIYEWL 67
+N + +L E K T+ A C +CL P T CGH++CW CI EW
Sbjct: 296 VLNEEGNLITSEAEKGNWSTSDSTSTEAVGKCTLCLSTRQHPTATPCGHVFCWSCIMEW- 354
Query: 68 CPGVGSTASNNSSLARRQCPVCKATLSPDMLVPLY 102
C +++CP+C+ + LV LY
Sbjct: 355 CN------------EKQECPLCRTPNTHSSLVCLY 377
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.134 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,511,411
Number of extensions: 242021
Number of successful extensions: 1368
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 1365
Number of HSP's successfully gapped: 12
Length of query: 253
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 157
Effective length of database: 8,474,633
Effective search space: 1330517381
Effective search space used: 1330517381
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 110 (47.0 bits)