BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0466100 Os05g0466100|AK108647
(324 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0466100 CCT domain containing protein 429 e-120
Os01g0835700 CCT domain containing protein 132 5e-31
Os12g0262400 89 3e-18
Os12g0101000 RNase P subunit p30 family protein 81 1e-15
Os11g0101200 Similar to CONSTANS-like protein CO6 (Fragment) 81 1e-15
Os10g0466500 CCT domain containing protein 79 6e-15
Os03g0139500 Similar to CONSTANS-like protein CO9 (Fragment) 78 8e-15
Os05g0595300 Similar to CONSTANS-like protein 69 5e-12
>Os05g0466100 CCT domain containing protein
Length = 324
Score = 429 bits (1102), Expect = e-120, Method: Compositional matrix adjust.
Identities = 222/324 (68%), Positives = 222/324 (68%)
Query: 1 MFHXXXXXXXXXXXXXXMHHALSFSSALPTAPTEIPGSGGGFVDDKGSMFSLPNVAGSAX 60
MFH MHHALSFSSALPTAPTEIPGSGGGFVDDKGSMFSLPNVAGSA
Sbjct: 1 MFHPSSSSSPPTYSDSSMHHALSFSSALPTAPTEIPGSGGGFVDDKGSMFSLPNVAGSAP 60
Query: 61 XXXXXXXXXXFYIXXXXXXXXXXXXXXXXXXNSNAAFSYSSAPACQXXXXXXXXXXXXXX 120
FYI NSNAAFSYSSAPACQ
Sbjct: 61 PPSYYSSLPSFYIHRSTSSHSLLHHRLSDLLNSNAAFSYSSAPACQLQPLPPVSSSTSSS 120
Query: 121 XXXXXXXXXGTLRRVFSTGDLQAMNVXXXXXXXXXFSGDICIQEVGGPFSQKVGRYSAEE 180
GTLRRVFSTGDLQAMNV FSGDICIQEVGGPFSQKVGRYSAEE
Sbjct: 121 SGDLLEFSSGTLRRVFSTGDLQAMNVPPSPPPPPPFSGDICIQEVGGPFSQKVGRYSAEE 180
Query: 181 RKERIERYRVKRQQRNFHKKITYACRKTLADSRPRVQGRFXXXXXXXXXXXXXXXXXXXT 240
RKERIERYRVKRQQRNFHKKITYACRKTLADSRPRVQGRF T
Sbjct: 181 RKERIERYRVKRQQRNFHKKITYACRKTLADSRPRVQGRFARNAETEADAEADAVAGLDT 240
Query: 241 EVYGNGYGYCAYSGLTNSISSNCYDNQSQSQWWGTPAGAANWXXXXXXXXLGFDVAVDGD 300
EVYGNGYGYCAYSGLTNSISSNCYDNQSQSQWWGTPAGAANW LGFDVAVDGD
Sbjct: 241 EVYGNGYGYCAYSGLTNSISSNCYDNQSQSQWWGTPAGAANWQHQQQKQQLGFDVAVDGD 300
Query: 301 DEDYELCCGPASLTCAQGPDPELI 324
DEDYELCCGPASLTCAQGPDPELI
Sbjct: 301 DEDYELCCGPASLTCAQGPDPELI 324
>Os01g0835700 CCT domain containing protein
Length = 335
Score = 132 bits (331), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 67/89 (75%), Positives = 72/89 (80%), Gaps = 2/89 (2%)
Query: 132 LRRVFSTGDLQAMNVXXXXXXXXXFSGDICIQEVGGPFSQKVGRYSAEERKERIERYRVK 191
+RRVFSTGDLQ MN SG+ C Q+ GPFSQKVGRYSAEERKERIERYRVK
Sbjct: 141 VRRVFSTGDLQGMNGSSPPRPLP--SGESCGQDGSGPFSQKVGRYSAEERKERIERYRVK 198
Query: 192 RQQRNFHKKITYACRKTLADSRPRVQGRF 220
R QRNF+KKITYACRKTLADSRPRV+GRF
Sbjct: 199 RHQRNFNKKITYACRKTLADSRPRVKGRF 227
>Os12g0262400
Length = 231
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 40/48 (83%), Positives = 44/48 (91%)
Query: 173 VGRYSAEERKERIERYRVKRQQRNFHKKITYACRKTLADSRPRVQGRF 220
VGRYSAEER+ERIE+YR KR RNF +KITYACRKTLADSRPRV+GRF
Sbjct: 99 VGRYSAEERQERIEKYRSKRNHRNFERKITYACRKTLADSRPRVKGRF 146
>Os12g0101000 RNase P subunit p30 family protein
Length = 889
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 35/42 (83%), Positives = 39/42 (92%)
Query: 179 EERKERIERYRVKRQQRNFHKKITYACRKTLADSRPRVQGRF 220
EER+ERI++YR KR QRNF KKITYACRKTLADSRPRV+GRF
Sbjct: 773 EERRERIDKYRSKRNQRNFDKKITYACRKTLADSRPRVKGRF 814
>Os11g0101200 Similar to CONSTANS-like protein CO6 (Fragment)
Length = 462
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 35/42 (83%), Positives = 39/42 (92%)
Query: 179 EERKERIERYRVKRQQRNFHKKITYACRKTLADSRPRVQGRF 220
EER+ERI++YR KR QRNF KKITYACRKTLADSRPRV+GRF
Sbjct: 346 EERRERIDKYRSKRNQRNFDKKITYACRKTLADSRPRVKGRF 387
>Os10g0466500 CCT domain containing protein
Length = 283
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 36/49 (73%), Positives = 39/49 (79%)
Query: 172 KVGRYSAEERKERIERYRVKRQQRNFHKKITYACRKTLADSRPRVQGRF 220
K R S EERKE+I RY KR +RNF KKI YACRKTLADSRPRV+GRF
Sbjct: 178 KTVRLSNEERKEKIHRYIKKRNERNFSKKIKYACRKTLADSRPRVRGRF 226
>Os03g0139500 Similar to CONSTANS-like protein CO9 (Fragment)
Length = 388
Score = 78.2 bits (191), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 34/46 (73%), Positives = 39/46 (84%)
Query: 175 RYSAEERKERIERYRVKRQQRNFHKKITYACRKTLADSRPRVQGRF 220
R +AE+RKE+I RY KR +RNF KKI YACRKTLADSRPRV+GRF
Sbjct: 284 RLTAEQRKEKISRYIKKRNERNFSKKIKYACRKTLADSRPRVRGRF 329
>Os05g0595300 Similar to CONSTANS-like protein
Length = 308
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 53/89 (59%), Gaps = 5/89 (5%)
Query: 132 LRRVFSTGDLQAMNVXXXXXXXXXFSGDICIQEVGGPFSQKVGRYSAEERKERIERYRVK 191
LRR +S GD+Q + SG+ + + + +EERK+++ RYR K
Sbjct: 212 LRRAYSEGDIQNLGASTPRPGN---SGNAQLASCERLVT--ISDLKSEERKQKLSRYRKK 266
Query: 192 RQQRNFHKKITYACRKTLADSRPRVQGRF 220
+ +RNF +KI YACRK LADS+PRV+GRF
Sbjct: 267 KVKRNFGRKIKYACRKALADSQPRVRGRF 295
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.134 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,489,942
Number of extensions: 282554
Number of successful extensions: 639
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 635
Number of HSP's successfully gapped: 8
Length of query: 324
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 223
Effective length of database: 11,762,187
Effective search space: 2622967701
Effective search space used: 2622967701
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)