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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0139500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to CONSTANS-like protein CO9 (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.18 (0.0186) R2 : 0.000475
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0182 (0.0391) R2dN8 : 0.000613 R2N8 : 0.000475
σ : 0.35
deviance : 56.28
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
53.76 0.345 3.14 0.179 0.106 -0.336 -0.067 1.4 -0.0194 6.9 50 4315 -- --
54.95 0.345 3.18 0.149 0.0917 -0.128 -0.0741 -- -0.0234 6.36 55.33 1044 -- --
53.77 0.342 3.14 0.177 0.105 -0.334 -- 1.4 -0.0194 7.19 50 4300 -- --
54.96 0.345 3.18 0.135 0.103 -0.118 -- -- -0.0263 6.95 55.87 1063 -- --
54.36 0.343 3.15 0.179 -- -0.335 -- 1.4 -0.0172 -- 49.96 4300 -- --
55.35 0.349 3.18 0.113 0.106 -- -0.0495 -- -0.00742 7.46 -- -- -- --
55.35 0.348 3.18 0.112 0.105 -- -- -- -0.00723 7.64 -- -- -- --
54.57 0.344 3.18 0.0185 -- 0.257 -- -- 0.00362 -- 38 9970 -- --
55.42 0.347 3.18 -- 0.102 -0.0936 -- -- -0.0374 7.06 55.58 1051 -- --
55.95 0.35 3.18 0.113 -- -- -- -- -0.00566 -- -- -- -- --
55.68 0.349 3.18 -- 0.106 -- -- -- -0.0197 7.56 -- -- -- --
54.57 0.344 3.18 -- -- 0.257 -- -- 0.00361 -- 38 9966 -- --
56.28 0.35 3.18 -- -- -- -- -- -0.0182 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 45.29 wind 1.0 30 < th dose independent rect. 2 1
2 45.33 wind 3.0 30 < th dose dependent rect. 2 1
5 45.37 atmosphere 1015.0 30 < th dose dependent rect. 2 1
7 45.39 temperature 25.0 30 < th dose independent rect. 2 1
14 45.44 temperature 10.0 30 > th dose independent rect. 2 1
17 45.44 humidity 50.0 30 > th dose independent rect. 2 1
20 45.44 atmosphere 995.0 30 > th dose independent rect. 2 1
21 45.44 atmosphere 1010.0 30 < th dose independent rect. 2 1
23 45.44 radiation 1.0 30 < th dose independent rect. 2 1
28 45.44 precipitation 0.1 30 < th dose independent rect. 2 1
29 45.44 temperature 10.0 30 > th dose independent rect. 3 23
30 45.44 humidity 50.0 30 > th dose dependent rect. 2 1
31 45.44 atmosphere 1005.0 30 > th dose dependent rect. 2 1
32 45.44 radiation 1.0 30 < th dose dependent rect. 2 1
37 45.44 precipitation 0.1 30 < th dose dependent rect. 2 1
38 45.45 temperature 10.0 30 > th dose dependent rect. 2 1
44 45.49 temperature 30.0 30 < th dose dependent rect. 2 1
48 45.53 atmosphere 995.0 30 > th dose dependent rect. 2 1
52 45.58 atmosphere 1005.0 30 > th dose independent rect. 2 1
61 45.71 wind 9.0 30 < th dose independent rect. 3 23
96 45.97 wind 1.0 30 > th dose independent rect. 2 1
110 48.17 atmosphere 995.0 30 > th dose independent rect. 3 23
119 49.01 precipitation 0.1 30 < th dose independent rect. 3 23
120 49.01 precipitation 0.1 30 < th dose dependent rect. 3 23
133 49.99 wind 9.0 4320 < th dose independent rect. 3 1
134 50.01 radiation 1.0 43200 < th dose dependent rect. 3 1
144 50.31 temperature 10.0 1440 > th dose independent rect. 3 1
147 50.31 temperature 30.0 1440 < th dose independent rect. 3 1
151 50.31 humidity 50.0 1440 > th dose independent rect. 3 1
160 50.31 atmosphere 995.0 1440 > th dose independent rect. 3 1
161 50.31 radiation 1.0 1440 < th dose independent rect. 3 1
181 50.31 temperature 10.0 1440 > th dose independent rect. 4 23
184 50.31 radiation 1.0 1440 < th dose dependent rect. 3 1
223 50.58 humidity 50.0 30 > th dose independent rect. 3 23
250 50.67 humidity 90.0 90 < th dose independent rect. 2 1
260 50.91 temperature 10.0 720 > th dose independent rect. 15 8
261 50.91 temperature 10.0 720 > th dose independent rect. 23 16
270 51.07 temperature 10.0 720 > th dose independent rect. 3 8
271 51.07 atmosphere 995.0 720 > th dose independent rect. 3 8
272 51.07 temperature 10.0 720 > th dose independent rect. 11 16
274 51.12 atmosphere 995.0 720 > th dose independent rect. 23 16
276 51.16 precipitation 0.1 720 < th dose independent rect. 15 8
278 51.16 precipitation 0.1 720 < th dose dependent rect. 15 8
279 51.18 wind 9.0 720 < th dose independent rect. 3 8
280 51.20 radiation 40.0 720 < th dose independent rect. 15 8
311 51.40 atmosphere 1015.0 30 < th dose independent rect. 3 23
313 51.42 humidity 50.0 720 > th dose independent rect. 3 8
314 51.44 atmosphere 1015.0 720 < th dose independent rect. 3 8
326 51.60 wind 1.0 30 > th dose dependent rect. 2 1
333 51.69 precipitation 0.1 720 < th dose independent rect. 23 16
335 51.69 precipitation 0.1 720 < th dose dependent rect. 23 16
337 51.72 precipitation 0.1 720 < th dose independent rect. 11 16
339 51.72 precipitation 0.1 720 < th dose dependent rect. 11 16
346 51.78 precipitation 0.1 720 < th dose independent rect. 3 8
347 51.78 precipitation 0.1 720 < th dose dependent rect. 3 8
350 51.82 atmosphere 1015.0 1440 < th dose independent rect. 3 1
361 51.86 temperature 10.0 30 > th dose dependent rect. 3 23
372 51.97 radiation 40.0 90 < th dose independent rect. 13 14
374 51.99 wind 9.0 720 < th dose independent rect. 15 8
385 52.09 wind 9.0 30 < th dose dependent rect. 3 23
402 52.21 atmosphere 995.0 720 > th dose independent rect. 11 16
403 52.22 atmosphere 995.0 720 > th dose independent rect. 15 8
414 52.27 radiation 40.0 90 < th dose dependent rect. 13 14
427 52.36 temperature 25.0 720 > th dose independent rect. 3 6
431 52.38 wind 9.0 720 < th dose independent rect. 23 16
432 52.40 wind 1.0 10 < th dose independent rect. 14 13
458 52.43 wind 1.0 10 < th dose independent rect. 17 10
463 52.45 wind 1.0 10 < th dose independent rect. 21 6
470 52.46 radiation 40.0 30 < th dose independent rect. 14 12
482 52.52 wind 5.0 14400 < th dose independent rect. 11 1
485 52.53 humidity 60.0 720 > th dose dependent rect. 3 1
494 52.56 temperature 25.0 720 > th dose dependent rect. 3 5
500 52.59 atmosphere 1000.0 10 > th dose independent rect. 14 12
507 52.62 humidity 80.0 14400 < th dose dependent rect. 2 7
510 52.63 humidity 60.0 10 > th dose independent rect. 14 12
522 52.66 wind 1.0 10 < th dose independent rect. 6 21
550 52.67 temperature 10.0 90 > th dose dependent rect. 3 9
551 52.68 wind 5.0 14400 > th dose independent rect. 11 1
553 52.69 atmosphere 995.0 720 > th dose independent rect. 3 23
557 52.70 atmosphere 1000.0 10 > th dose independent rect. 2 12
588 52.74 atmosphere 1000.0 10 > th dose independent rect. 16 10
590 52.74 atmosphere 995.0 720 > th dose independent rect. 15 23
601 52.75 radiation 10.0 30 < th dose independent rect. 3 23
605 52.76 wind 1.0 720 > th dose independent rect. 14 1
612 52.77 temperature 20.0 90 > th dose independent rect. 3 9
614 52.77 radiation 40.0 10 < th dose dependent rect. 14 12
616 52.78 temperature 10.0 10 > th dose independent rect. 2 12
618 52.78 temperature 10.0 10 > th dose independent rect. 14 12
620 52.78 atmosphere 1015.0 10 < th dose independent rect. 2 12
622 52.78 temperature 10.0 720 > th dose dependent rect. 3 1
626 52.79 atmosphere 995.0 720 > th dose independent rect. 14 1
628 52.79 wind 9.0 30 < th dose independent rect. 14 12
630 52.79 humidity 80.0 14400 < th dose dependent rect. 7 1
651 52.80 precipitation 0.1 30 < th dose independent rect. 2 12
652 52.80 wind 7.0 90 < th dose independent rect. 13 14
653 52.80 wind 1.0 10 < th dose independent rect. 8 19
661 52.80 precipitation 0.1 30 < th dose dependent rect. 2 12
671 52.82 radiation 1.0 720 > th dose independent rect. 14 1
672 52.82 precipitation 0.1 720 < th dose independent rect. 2 1
675 52.82 temperature 10.0 1440 > th dose independent rect. 3 12
678 52.82 temperature 10.0 1440 > th dose independent rect. 15 12
681 52.82 precipitation 0.1 30 < th dose independent rect. 14 12
682 52.82 radiation 40.0 30 < th dose independent rect. 3 23
683 52.82 precipitation 0.1 720 < th dose dependent rect. 2 1
684 52.82 precipitation 0.1 30 < th dose dependent rect. 14 12
686 52.83 temperature 10.0 720 > th dose independent rect. 14 1
687 52.83 atmosphere 1015.0 720 < th dose independent rect. 14 1
690 52.83 temperature 10.0 720 > th dose independent rect. 15 23
695 52.84 precipitation 0.1 720 < th dose independent rect. 14 1
698 52.84 precipitation 0.1 720 < th dose dependent rect. 14 1
700 52.84 atmosphere 995.0 30 > th dose dependent rect. 3 23
703 52.85 wind 3.0 14400 > th dose dependent rect. 11 1
707 52.86 wind 9.0 10 < th dose independent rect. 2 12
731 52.91 humidity 90.0 720 > th dose independent rect. 3 1
740 52.91 temperature 20.0 720 > th dose dependent rect. 3 1
741 52.92 wind 9.0 720 < th dose independent rect. 14 1
743 52.92 wind 9.0 90 < th dose independent rect. 3 10
765 52.93 temperature 10.0 90 > th dose independent rect. 3 10
767 52.93 atmosphere 995.0 90 > th dose independent rect. 3 10
768 52.93 atmosphere 1015.0 90 < th dose independent rect. 3 10
771 52.93 temperature 10.0 90 > th dose independent rect. 13 14
782 52.94 precipitation 0.1 720 < th dose independent rect. 7 8
784 52.94 wind 9.0 720 < th dose independent rect. 11 16
787 52.94 precipitation 0.1 720 < th dose dependent rect. 7 8
791 52.95 atmosphere 1015.0 90 < th dose independent rect. 12 15
801 52.96 wind 5.0 14400 < th dose independent rect. 9 6
809 52.97 wind 5.0 14400 > th dose independent rect. 9 6
810 52.97 temperature 25.0 720 < th dose independent rect. 2 7
812 52.97 humidity 50.0 10 > th dose independent rect. 2 12
814 52.97 temperature 30.0 90 < th dose independent rect. 1 14
816 52.97 radiation 1.0 720 < th dose dependent rect. 18 9
817 52.98 radiation 40.0 720 < th dose independent rect. 15 1
824 52.98 temperature 30.0 10 < th dose independent rect. 14 12
915 53.01 wind 9.0 10 < th dose dependent rect. 13 15
940 53.04 temperature 30.0 30 < th dose independent rect. 2 12
960 53.05 humidity 50.0 10 > th dose independent rect. 2 14
969 53.06 wind 1.0 720 > th dose independent rect. 15 8
976 53.07 humidity 70.0 14400 > th dose independent rect. 8 1
977 53.07 precipitation 0.1 90 < th dose independent rect. 3 10
981 53.07 precipitation 0.1 90 < th dose independent rect. 12 15
984 53.07 precipitation 0.1 90 < th dose dependent rect. 3 10
985 53.07 precipitation 0.1 90 < th dose dependent rect. 12 15
993 53.09 temperature 30.0 720 < th dose independent rect. 15 8