BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0139500 Os03g0139500|AK071184
(388 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0139500 Similar to CONSTANS-like protein CO9 (Fragment) 721 0.0
Os10g0466500 CCT domain containing protein 201 7e-52
Os01g0835700 CCT domain containing protein 87 2e-17
Os05g0466100 CCT domain containing protein 85 1e-16
Os11g0101200 Similar to CONSTANS-like protein CO6 (Fragment) 82 8e-16
Os12g0101000 RNase P subunit p30 family protein 82 9e-16
Os05g0595300 Similar to CONSTANS-like protein 80 2e-15
Os12g0262400 80 3e-15
>Os03g0139500 Similar to CONSTANS-like protein CO9 (Fragment)
Length = 388
Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/388 (90%), Positives = 351/388 (90%)
Query: 1 MLHDDCIGEGLSSPIAAQIXXXXXXXXXXXXXAAVATTSEQFAAXXXXXXXXXTATPPLC 60
MLHDDCIGEGLSSPIAAQI AAVATTSEQFAA TATPPLC
Sbjct: 1 MLHDDCIGEGLSSPIAAQILDFCDDGLGDDLFAAVATTSEQFAASSEDGSSSSTATPPLC 60
Query: 61 SNSNDITAVADTAFSPLLSFDSTLSAFLEQEQNPDQDTKLLPSIDXXXXXXXXXXXXXXX 120
SNSNDITAVADTAFSPLLSFDSTLSAFLEQEQNPDQDTKLLPSID
Sbjct: 61 SNSNDITAVADTAFSPLLSFDSTLSAFLEQEQNPDQDTKLLPSIDETFTAPAYYPAATEA 120
Query: 121 NIEQFSQIMVPEHTDAPMPPMQTNRTANALLPLASGYDDECFTAALAGGYMGLDGTLYDQ 180
NIEQFSQIMVPEHTDAPMPPMQTNRTANALLPLASGYDDECFTAALAGGYMGLDGTLYDQ
Sbjct: 121 NIEQFSQIMVPEHTDAPMPPMQTNRTANALLPLASGYDDECFTAALAGGYMGLDGTLYDQ 180
Query: 181 TGVMIPNCNVETPQVGFFNHNSTSNNGMVMDLNNFGEYQRMMEGEGLTRTYSDTDSMHGA 240
TGVMIPNCNVETPQVGFFNHNSTSNNGMVMDLNNFGEYQRMMEGEGLTRTYSDTDSMHGA
Sbjct: 181 TGVMIPNCNVETPQVGFFNHNSTSNNGMVMDLNNFGEYQRMMEGEGLTRTYSDTDSMHGA 240
Query: 241 FNNAAEMQMGENTQHMVTGCNDSPLTLPSTEGSSLEDTPYKGVRLTAEQRKEKISRYIKK 300
FNNAAEMQMGENTQHMVTGCNDSPLTLPSTEGSSLEDTPYKGVRLTAEQRKEKISRYIKK
Sbjct: 241 FNNAAEMQMGENTQHMVTGCNDSPLTLPSTEGSSLEDTPYKGVRLTAEQRKEKISRYIKK 300
Query: 301 RNERNFSKKIKYACRKTLADSRPRVRGRFAKNDELCEATRSSSQDFEQYEHVVGMKGEDM 360
RNERNFSKKIKYACRKTLADSRPRVRGRFAKNDELCEATRSSSQDFEQYEHVVGMKGEDM
Sbjct: 301 RNERNFSKKIKYACRKTLADSRPRVRGRFAKNDELCEATRSSSQDFEQYEHVVGMKGEDM 360
Query: 361 LDSSNILAHLSGMNPYGYKYNSTVESWI 388
LDSSNILAHLSGMNPYGYKYNSTVESWI
Sbjct: 361 LDSSNILAHLSGMNPYGYKYNSTVESWI 388
>Os10g0466500 CCT domain containing protein
Length = 283
Score = 201 bits (511), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 114/183 (62%), Positives = 130/183 (71%), Gaps = 18/183 (9%)
Query: 213 NNFGEYQRMME-GEGLTRTYSDTDSMHGAFNNAA--EMQMGENTQHMVTGCNDSPLTLPS 269
+ GEYQRMME G L D AF NAA E+QMG G SP LP+
Sbjct: 112 DEIGEYQRMMECGGALLGATHAADGADMAFGNAAAAELQMG--------GGGSSPARLPA 163
Query: 270 T---EGSSLEDTPYKGVRLTAEQRKEKISRYIKKRNERNFSKKIKYACRKTLADSRPRVR 326
T E +SLEDT +K VRL+ E+RKEKI RYIKKRNERNFSKKIKYACRKTLADSRPRVR
Sbjct: 164 TGTTETTSLEDTSFKTVRLSNEERKEKIHRYIKKRNERNFSKKIKYACRKTLADSRPRVR 223
Query: 327 GRFAKNDELCEATRS-SSQDFEQYEHVVGMKGEDMLDSSNILAHLSGMNPYGYKYNSTVE 385
GRFAKND+ CEA+RS SQ+ E+YE + G+KGEDMLD S+ LAH+SGM+ Y YN TVE
Sbjct: 224 GRFAKNDDYCEASRSIGSQNHEEYEQIGGVKGEDMLD-SDALAHISGMSS--YMYNHTVE 280
Query: 386 SWI 388
SWI
Sbjct: 281 SWI 283
>Os01g0835700 CCT domain containing protein
Length = 335
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/83 (56%), Positives = 59/83 (71%), Gaps = 5/83 (6%)
Query: 257 VTGCNDS--PLTLPSTEGSSLEDT-PY--KGVRLTAEQRKEKISRYIKKRNERNFSKKIK 311
+ G N S P LPS E + + P+ K R +AE+RKE+I RY KR++RNF+KKI
Sbjct: 150 LQGMNGSSPPRPLPSGESCGQDGSGPFSQKVGRYSAEERKERIERYRVKRHQRNFNKKIT 209
Query: 312 YACRKTLADSRPRVRGRFAKNDE 334
YACRKTLADSRPRV+GRFA+N E
Sbjct: 210 YACRKTLADSRPRVKGRFARNGE 232
>Os05g0466100 CCT domain containing protein
Length = 324
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 37/51 (72%), Positives = 43/51 (84%)
Query: 284 RLTAEQRKEKISRYIKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKNDE 334
R +AE+RKE+I RY KR +RNF KKI YACRKTLADSRPRV+GRFA+N E
Sbjct: 175 RYSAEERKERIERYRVKRQQRNFHKKITYACRKTLADSRPRVQGRFARNAE 225
>Os11g0101200 Similar to CONSTANS-like protein CO6 (Fragment)
Length = 462
Score = 81.6 bits (200), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 35/51 (68%), Positives = 42/51 (82%)
Query: 282 GVRLTAEQRKEKISRYIKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKN 332
G L E+R+E+I +Y KRN+RNF KKI YACRKTLADSRPRV+GRFA+N
Sbjct: 340 GGGLVEEERRERIDKYRSKRNQRNFDKKITYACRKTLADSRPRVKGRFARN 390
>Os12g0101000 RNase P subunit p30 family protein
Length = 889
Score = 81.6 bits (200), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 35/51 (68%), Positives = 42/51 (82%)
Query: 282 GVRLTAEQRKEKISRYIKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKN 332
G L E+R+E+I +Y KRN+RNF KKI YACRKTLADSRPRV+GRFA+N
Sbjct: 767 GGGLVEEERRERIDKYRSKRNQRNFDKKITYACRKTLADSRPRVKGRFARN 817
>Os05g0595300 Similar to CONSTANS-like protein
Length = 308
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/50 (70%), Positives = 44/50 (88%)
Query: 285 LTAEQRKEKISRYIKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKNDE 334
L +E+RK+K+SRY KK+ +RNF +KIKYACRK LADS+PRVRGRFAK +E
Sbjct: 251 LKSEERKQKLSRYRKKKVKRNFGRKIKYACRKALADSQPRVRGRFAKIEE 300
>Os12g0262400
Length = 231
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 34/49 (69%), Positives = 42/49 (85%)
Query: 284 RLTAEQRKEKISRYIKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKN 332
R +AE+R+E+I +Y KRN RNF +KI YACRKTLADSRPRV+GRFA+N
Sbjct: 101 RYSAEERQERIEKYRSKRNHRNFERKITYACRKTLADSRPRVKGRFARN 149
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.128 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,991,376
Number of extensions: 458533
Number of successful extensions: 753
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 750
Number of HSP's successfully gapped: 8
Length of query: 388
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 285
Effective length of database: 11,657,759
Effective search space: 3322461315
Effective search space used: 3322461315
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 157 (65.1 bits)