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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0466100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : CCT domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.45 (0.0416) R2 : 0.373
β1 : 1.42 (0.153) R2dD : 0.123 R2D : 0.116
β2 : 1.36 (0.108) R2dC : 0.259 R2C : 0.106
β3 : 1.73 (0.177) R2dE : 0.157 R2E : -0.0178
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0204 (0.0891) R2dN8 : 0.000111 R2N8 : 0.00124
σ : 0.778
deviance : 278.97
__
_____
C
peak time of C : 0.847
E
wheather : humidity
threshold : 52
memory length : 1170
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
260.02 0.758 3.46 1.23 1.32 1.6 2.11 2.36 -0.0461 0.932 55.19 1202 -- --
267.07 0.761 3.44 1.47 1.32 1.74 1.8 -- -0.0229 0.922 52 1201 -- --
276.98 0.775 3.45 1.28 1.32 1.63 -- 1.29 -0.0441 0.947 53.98 1201 -- --
278.97 0.778 3.45 1.42 1.36 1.73 -- -- -0.0204 0.847 52 1170 -- --
317.02 0.834 3.43 1.26 -- 1.04 -- 2.07 -0.0453 -- 60.85 1623 -- --
327.67 0.849 3.46 1.37 0.946 -- 1.48 -- -0.0835 1.02 -- -- -- --
336.83 0.859 3.46 1.32 0.943 -- -- -- -0.0912 0.98 -- -- -- --
329.43 0.845 3.43 1.38 -- 1.61 -- -- 0.0103 -- 55.75 1630 -- --
330.46 0.847 3.47 -- 1.35 1.75 -- -- -0.0929 0.863 62.55 1193 -- --
392.16 0.925 3.45 1.36 -- -- -- -- -0.0731 -- -- -- -- --
382.76 0.915 3.49 -- 0.965 -- -- -- -0.238 1.04 -- -- -- --
374.63 0.904 3.46 -- -- 1.03 -- -- -0.141 -- 68.83 1631 -- --
440.63 0.98 3.48 -- -- -- -- -- -0.224 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 253.94 humidity 50 720 > th dose dependent rect. 16 16
4 255.81 humidity 90 720 < th dose dependent rect. 17 16
6 255.89 humidity 60 720 > th dose dependent rect. 18 5
11 256.35 humidity 70 720 > th dose dependent rect. 19 2
15 256.65 humidity 50 720 > th dose dependent sin 13 NA
17 256.86 humidity 50 720 > th dose dependent rect. 18 9
18 256.98 humidity 50 1440 > th dose dependent rect. 13 19
20 257.21 humidity 90 1440 < th dose dependent rect. 13 19
31 257.87 humidity 50 1440 > th dose dependent rect. 13 15
33 257.89 humidity 90 720 < th dose dependent rect. 17 8
37 257.97 humidity 90 720 < th dose dependent sin 12 NA
48 258.28 humidity 90 1440 < th dose dependent sin 14 NA
57 258.46 humidity 90 720 < th dose dependent rect. 16 12
178 260.06 humidity 80 720 > th dose independent rect. 19 3
291 261.81 humidity 80 1440 > th dose independent rect. 11 22
328 262.30 humidity 80 1440 > th dose independent rect. 6 16
386 262.97 humidity 80 1440 > th dose independent rect. 6 19
437 263.24 humidity 80 1440 > th dose independent rect. 11 11
473 263.43 humidity 80 1440 < th dose independent rect. 6 15
486 263.53 humidity 80 1440 < th dose independent rect. 11 22
488 263.55 humidity 80 720 > th dose independent rect. 16 6
493 263.57 humidity 60 1440 > th dose dependent rect. 6 20
540 263.80 wind 1 43200 > th dose dependent rect. 23 6
546 263.82 humidity 90 1440 < th dose dependent rect. 16 1
601 264.08 humidity 80 1440 > th dose independent rect. 11 14
633 264.24 wind 1 43200 > th dose dependent rect. 24 4
639 264.27 humidity 60 1440 > th dose dependent no NA NA
662 264.37 humidity 80 1440 > th dose independent sin 20 NA
677 264.42 wind 9 43200 < th dose dependent rect. 23 6
696 264.46 humidity 60 1440 > th dose dependent rect. 22 23
725 264.56 wind 9 43200 < th dose dependent rect. 1 3
808 264.83 humidity 60 1440 > th dose dependent rect. 18 23
844 264.96 humidity 80 1440 > th dose independent no NA NA
846 264.96 humidity 80 1440 > th dose independent rect. 18 23
847 264.96 wind 5 43200 < th dose dependent rect. 2 1
859 265.02 radiation 10 1440 > th dose independent rect. 13 18
897 265.15 humidity 50 1440 > th dose dependent rect. 16 1
911 265.21 humidity 80 1440 < th dose independent rect. 11 11
914 265.22 humidity 80 1440 < th dose independent sin 21 NA
918 265.23 humidity 80 1440 > th dose independent rect. 21 23
919 265.23 humidity 90 1440 < th dose dependent rect. 15 23