Os05g0595300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to CONSTANS-like protein.
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Os05g0595300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to CONSTANS-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 83.56 | 0.429 | 11.4 | 0.329 | 2.32 | -2.9 | 0.229 | -2.7 | -0.0827 | 12.7 | 9.579 | 564 | 0.347 | -- |
| 87.12 | 0.435 | 11.3 | 0.647 | 2.26 | -3.04 | -1.23 | -- | 0.000525 | 12 | 8.132 | 579 | 1.03 | -- |
| 83.59 | 0.426 | 11.4 | 0.341 | 2.28 | -2.85 | -- | -2.5 | -0.089 | 12.8 | 10.1 | 556 | 0.25 | -- |
| 92.82 | 0.449 | 11.3 | 0.592 | 2.33 | -2.94 | -- | -- | -0.015 | 12.7 | 9.52 | 551 | 0.269 | -- |
| 120.57 | 0.511 | 11.4 | 0.542 | -- | -1.99 | -- | -0.787 | -0.0884 | -- | -26.53 | 3267 | 4.25 | -- |
| 142.03 | 0.559 | 11.5 | 0.186 | 1.09 | -- | -0.78 | -- | -0.326 | 16.4 | -- | -- | -- | -- |
| 143.41 | 0.561 | 11.5 | 0.179 | 1.1 | -- | -- | -- | -0.331 | 16.6 | -- | -- | -- | -- |
| 120.33 | 0.511 | 11.4 | 0.626 | -- | -1.96 | -- | -- | -0.0636 | -- | -58.93 | 3096 | 3.09 | -- |
| 101.7 | 0.47 | 11.4 | -- | 2.22 | -2.68 | -- | -- | -0.107 | 13 | 9.316 | 546 | 0.0522 | -- |
| 207.33 | 0.673 | 11.4 | 0.137 | -- | -- | -- | -- | -0.359 | -- | -- | -- | -- | -- |
| 144.25 | 0.562 | 11.5 | -- | 1.09 | -- | -- | -- | -0.35 | 16.6 | -- | -- | -- | -- |
| 128.61 | 0.528 | 11.4 | -- | -- | -1.76 | -- | -- | -0.216 | -- | -160.9 | 2997 | 2.35 | -- |
| 207.83 | 0.673 | 11.4 | -- | -- | -- | -- | -- | -0.374 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 85.25 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 17 |
| 3 | 85.38 | temperature | 15 | 720 | > th | dose dependent | rect. | 22 | 13 |
| 4 | 85.56 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 10 |
| 21 | 86.79 | temperature | 10 | 720 | > th | dose dependent | sin | 7 | NA |
| 35 | 87.46 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 16 |
| 55 | 88.26 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 8 |
| 96 | 89.89 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 5 |
| 126 | 90.48 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 3 |
| 206 | 92.59 | temperature | 10 | 270 | > th | dose dependent | sin | 2 | NA |
| 258 | 93.72 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 10 |
| 263 | 93.78 | temperature | 25 | 270 | < th | dose independent | rect. | 5 | 7 |
| 266 | 93.85 | temperature | 30 | 720 | < th | dose dependent | sin | 7 | NA |
| 272 | 93.94 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 14 |
| 316 | 94.55 | temperature | 25 | 270 | < th | dose independent | rect. | 6 | 5 |
| 351 | 95.14 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 4 |
| 439 | 96.40 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 18 |
| 457 | 96.76 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 3 |
| 550 | 98.07 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 19 |
| 568 | 98.21 | temperature | 30 | 270 | < th | dose dependent | rect. | 4 | 21 |
| 611 | 98.68 | temperature | 30 | 270 | < th | dose independent | rect. | 6 | 17 |
| 794 | 100.61 | temperature | 30 | 10 | < th | dose independent | rect. | 7 | 7 |
| 809 | 100.70 | temperature | 30 | 10 | < th | dose independent | rect. | 20 | 16 |
| 838 | 101.05 | temperature | 30 | 90 | < th | dose independent | rect. | 20 | 16 |
| 889 | 101.55 | temperature | 30 | 270 | < th | dose dependent | sin | 1 | NA |
| 984 | 102.38 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 9 |
| 1000 | 102.48 | temperature | 10 | 270 | > th | dose dependent | rect. | 8 | 11 |